PXD047316

PXD047316 is an original dataset announced via ProteomeXchange.

Title	Newly synthesized proteome analysis of EPP2 cells, with combinations of induced Ctu1- or Elp3 KO and DMSO-, Torin1- and Rapamycin treatments
Description	Newly synthesized proteome analysis of EPP2 murine pancreatic cancer cells with induced knockout of tRNA wobble enzymes Elp3 or Ctu1 and mTOR inhibitor treatment. Knockouts were induced for 4 days, mTOR inhibitors were 5 h rapamycin [50 nM] or torin 1 [50 nM].
HostingRepository	PRIDE
AnnounceDate	2025-05-07
AnnouncementXML	Submission_2025-05-07_13:03:24.436.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Toman Bortecen
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2023-11-28 01:04:37	ID requested
⏵ 1	2025-05-07 13:03:24	announced

10.1038/S41467-025-59185-4;

submitter keyword: SILAC, plexDIA, QuaNPA

Jeroen Krijgsveld
contact affiliation	Heidelberg University Clinic German Cancer Research Center
contact email	j.krijgsveld@dkfz-heidelberg.de
lab head
Toman Bortecen
contact affiliation	German Cancer Research Center (DKFZ)
contact email	toman@hotmail.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD047316

PRIDE project URI

• PRIDE
  1. PXD047316
     1. Label: PRIDE project
     2. Name: Newly synthesized proteome analysis of EPP2 cells, with combinations of induced Ctu1- or Elp3 KO and DMSO-, Torin1- and Rapamycin treatments