<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ProteomeXchangeDataset id="PXD043696" formatVersion="1.4.0" xsi:noNamespaceSchemaLocation="proteomeXchange-1.4.0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<CvList>
<Cv fullName="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" id="MS"/>
<Cv fullName="PSI-MOD" uri="http://psidev.cvs.sourceforge.net/psidev/psi/mod/data/PSI-MOD.obo" id="MOD"/>
<Cv fullName="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" id="UNIMOD"/>
</CvList>
<ChangeLog>
<ChangeLogEntry date="2023-08-14">Update publication information.</ChangeLogEntry>
<ChangeLogEntry date="2023-08-23">Update information.</ChangeLogEntry>
</ChangeLog>
<DatasetSummary announceDate="2023-07-12" hostingRepository="iProX" title="Proteomic profiling of chirality-biased bone regeneration">
<Description>The project investigated chirality-biased proteome during the early stage of bone regeneration on day 3 and day 7.</Description>
<ReviewLevel>
<cvParam cvRef="MS" accession="MS:1002854" name="Peer-reviewed dataset"/>
</ReviewLevel>
<RepositorySupport>
<cvParam cvRef="MS" accession="MS:1002857" name="Unsupported dataset by repository"/>
</RepositorySupport>
</DatasetSummary>
<DatasetIdentifierList>
<DatasetIdentifier>
<cvParam cvRef="MS" accession="MS:1001919" name="ProteomeXchange accession number" value="PXD043696"/>
<cvParam cvRef="MS" accession="MS:1001921" name="ProteomeXchange accession number version number" value="3"/>
</DatasetIdentifier>
<DatasetIdentifier>
<cvParam cvRef="MS" accession="MS:1002836" name="iProX dataset identifier" value="IPX0006714000"/>
</DatasetIdentifier>
</DatasetIdentifierList>
<DatasetOriginList>
<DatasetOrigin>
<cvParam cvRef="MS" accession="MS:1002868" name="Original data"/>
</DatasetOrigin>
</DatasetOriginList>
<SpeciesList>
<Species>
<cvParam cvRef="MS" accession="MS:1001469" name="taxonomy: scientific name" value="Rattus norvegicus"/>
<cvParam cvRef="MS" accession="MS:1001467" name="taxonomy: NCBI TaxID" value="10116"/>
</Species>
</SpeciesList>
<InstrumentList>
<Instrument id="Instrument_1">
<cvParam cvRef="MS" accession="MS:1002877" name="Q Exactive HF-X"/>
</Instrument>
</InstrumentList>
<ModificationList>
<cvParam cvRef="MS" accession="MS:1002864" name="No PTMs are included in the dataset"/>
</ModificationList>
<ContactList>
<Contact id="project_submitter">
<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Qiang Zeng"/>
<cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="zengqiang93@126.com"/>
<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="Peking University School and Hospital of Stomatology"/>
<cvParam cvRef="MS" accession="MS:1002037" name="dataset submitter"/>
</Contact>
<Contact id="project_lab_head">
<cvParam cvRef="MS" accession="MS:1002332" name="lab head"/>
<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Xuliang Deng"/>
<cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="kqdengxuliang@bjmu.edu.cn"/>
<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="Peking University School and Hospital of Stomatology"/>
</Contact>
</ContactList>
<PublicationList>
<Publication id="PMID37533694">
<cvParam cvRef="MS" accession="MS:1000879" name="PubMed identifier" value="37533694"/>
<cvParam cvRef="MS" accession="MS:1002866" name="Reference" value="Zeng Q, Zheng H, Heng BC, Yao W, Yang Y, Jiang S, Deng X. Chirality-biased protein expression profile during early stages of bone regeneration. Frontiers in Bioengineering and Biotechnology. 2023 Jul 18;11():1217919-. doi:10.3389/fbioe.2023.1217919. "/>
</Publication>
</PublicationList>
<KeywordList>
<cvParam cvRef="MS" accession="MS:1001925" name="submitter keyword" value="chirality, bone regeneration"/>
</KeywordList>
<FullDatasetLinkList>
<FullDatasetLink>
<cvParam cvRef="MS" accession="MS:1002837" name="iProX dataset URI" value="http://www.iprox.org/page/project.html?id=IPX0006714000"/>
</FullDatasetLink>
</FullDatasetLinkList>
<DatasetFileList>
<DatasetFile id="FILE_0" name="aD1_3D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD1_3D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_1" name="Ad1_7D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/Ad1_7D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_2" name="Ad2_7D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/Ad2_7D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_3" name="aD3_3D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD3_3D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_4" name="aD3_7D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD3_7D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_5" name="aD4_3D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD4_3D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_6" name="aD4_7D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD4_7D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_7" name="aD5_3D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD5_3D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_8" name="aD6_3D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD6_3D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_9" name="aD6_7D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD6_7D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_10" name="AL1_3D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/AL1_3D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_11" name="AL1_7D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/AL1_7D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_12" name="AL2_3D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/AL2_3D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_13" name="AL2_7D_F1_R1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/AL2_7D_F1_R1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_14" name="aD_3d_vs_aL_3d.xlsx">
<cvParam cvRef="MS" accession="MS:1002849" name="Search engine output file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD_3d_vs_aL_3d.xlsx"/>
</DatasetFile>
<DatasetFile id="FILE_15" name="aD_7d_vs_aL_7d.xlsx">
<cvParam cvRef="MS" accession="MS:1002849" name="Search engine output file URI" value="http://download.iprox.org/IPX0006714000/IPX0006714001/aD_7d_vs_aL_7d.xlsx"/>
</DatasetFile>
</DatasetFileList>
</ProteomeXchangeDataset>