PXD043046
PXD043046 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Deep quantitative proteomics of North American Pacific coast star tunicate |
| Description | The first proteomics analysis of a colonial tunicate (Botryllus schlosseri) was carried out to support development of a DIA assay library and quantitative proteomics for this species. Deep proteome coverage (up to 4930 protein groups and 20,984 unique peptides in a single sample) was achieved, which enabled construction of a QC filtered DIA assay library consisting of nearly 4000 proteins that are represented by at least 3 unique peptides, each by at least 4 transitions. This library was used to compare protein abundances of two field populations and one lab-reared B. schlosseri population. Relative protein abundance data indicate that lab-rearing leads to greater proteome changes than those observed between distantly located field populations in Southern California and Northern Washington. STRING analysis revealed functions that are enriched in specific populations and proteins that are least and most variable within a given population. |
| HostingRepository | PanoramaPublic |
| AnnounceDate | 2024-02-29 |
| AnnouncementXML | Submission_2024-02-29_20:56:01.479.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Dietmar Kültz |
| SpeciesList | scientific name: Botryllus schlosseri; NCBI TaxID: 30301; |
| ModificationList | Acetyl; Carbamidomethyl; Oxidation |
| Instrument | impact II |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2023-06-16 00:19:59 | ID requested | |
| 1 | 2023-06-16 08:07:10 | announced | |
| ⏵ 2 | 2024-02-29 20:56:02 | announced | : Added PubMed Id |
Publication List
| K, ü, ltz D, Gardell AM, DeTomaso A, Stoney G, Rinkevich B, Rinkevich Y, Qarri A, Dong W, Luu B, Lin M, Deep quantitative proteomics of North American Pacific coast star tunicate (Botryllus schlosseri). Proteomics, 24(15):e2300628(2024) [pubmed] |
Keyword List
| submitter keyword: tunicates, DIA, protein quantitation, network analysis, LCMS, ecological proteomics, evolutionary proteomics |
Contact List
| Dietmar Kültz | |
|---|---|
| contact affiliation | University of California, Davis |
| contact email | dkueltz@ucdavis.edu |
| lab head | |
| Dietmar Kültz | |
| contact affiliation | University of California, Davis |
| contact email | dkueltz@ucdavis.edu |
| dataset submitter | |
Full Dataset Link List
| Panorama Public dataset URI |
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