PXD042552

PXD042552 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	RgpBProtease_SubstrateSpecificity_MSPMS_082023_DFT
Description	This is a multiplex substrate profiling by mass spectrometry (MSP-MS, doi:10.1038/nmeth.2182) reaction involving the protease RgpB (PDB ID: 1CVR). 4 replicates of each time point were analyzed by LC-MS. Time points were taken at 0 minutes (inactivated enzyme, T000), 10 minutes (T010) and 30 minutes (T030).
HostingRepository	MassIVE
AnnounceDate	2023-06-02
AnnouncementXML	Submission_2023-06-02_13:30:40.378.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Diego Trujillo
SpeciesList	scientific name: Porphyromonas gingivalis; NCBI TaxID: 837; scientific name: synthetic construct; NCBI TaxID: 32630;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-30 16:09:40	ID requested
⏵ 1	2023-06-02 13:30:40	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: proteomics, MSP-MS, gingivitis, periodontitis, gingipain, substrate specificity, Rgp, RgpB

submitter keyword: proteomics, MSP-MS, gingivitis, periodontitis, gingipain, substrate specificity, Rgp, RgpB

Contact List

Anthony O'Donoghue
contact affiliation	UCSD
contact email	ajodonoghue@ucsd.edu
lab head
Diego Trujillo
contact affiliation	UCSD
contact email	dtrujill@ucsd.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000092057/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000092057/