PXD036252
PXD036252 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Single cell carbon and nitrogen incorporation and remineralization profiles are uncoupled from phylogenetic groupings of diatom-associated bacteria |
Description | We quantified bacterial incorporation of algal-derived complex dissolved organic C (DOC) and N (DON) and net algal incorporation of remineralized C and N at the single cell level using isotope tracing and NanoSIMS for fifteen bacterial co-cultures growing with the diatom Phaeodactylum tricornutum, and examined the expressed proteins of two of the isolates when growing with P. tricornutum. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline. |
HostingRepository | MassIVE |
AnnounceDate | 2022-08-25 |
AnnouncementXML | Submission_2022-08-25_09:21:01.191.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Matthew Monroe |
SpeciesList | scientific name: Phaeodactylum tricornutum; NCBI TaxID: 2850; |
ModificationList | Oxidation |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2022-08-24 14:43:43 | ID requested | |
⏵ 1 | 2022-08-25 09:21:01 | announced |
Publication List
Xavier Mayali, Ty Samo, Jeff Kimbrel, Rhona K. Stuart, Megan Morris, Kristina Rolison, Christina Ramon, Young-Mo Kim, Nathalie Munoz-Munoz, Carrie Nicora, Sam Purvine, Mary Lipton, Peter K. Weber. Single cell carbon and nitrogen incorporation and remineralization profiles are uncoupled from phylogenetic groupings of diatom-associated bacteria. bioRxiv. Epub 2022 Jul 02. doi: https://doi.org/10.1101/2022.07.01.498368. |
Keyword List
submitter keyword: algal-bacterial interactions, stable isotope probing, NanoSIMS, microbial ecology |
Contact List
Xavier Mayali | |
---|---|
contact affiliation | Lawrence Livermore National Laboratory |
contact email | mayali1@llnl.gov |
lab head | |
Matthew Monroe | |
contact affiliation | Pacific Northwest National Laboratory |
contact email | matthew.monroe@pnnl.gov |
dataset submitter |
Full Dataset Link List
MassIVE dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000090201/ |