This project provides tandem mass spectrometry datasets of Bacillus cereus ATCC 14579 wild-type strain without its pBClin15 plasmid devoided of both the methionine sulfoxide reductase AB (msrAB)and methionine sulfoxide reductase A (msrA) genes. The double mutant strain was grown under fermentative anaerobic condition and harvested at three growth stages.