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PXD024643 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleTDFragMapper: Evaluating experimental parameters for confident intact protein characterization in top-down proteomics
DescriptionNew software-tool allowing an easy visualization of fragment ions and thus a rapid evaluation of key experimental parameters on the sequence coverage obtained for the MS/MS analysis of intact proteins. Our tool can deal with multiple fragmentation methods. We demonstrate that TDFragMapper can rapidly highlight the experimental fragmentation parameters that are critical to the characterization of intact proteins of various size using top-down proteomics.
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
SpeciesList scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Streptococcus dysgalactiae; NCBI TaxID: 1334; scientific name: Bos taurus (Bovine); NCBI TaxID: 9913; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-03-10 03:26:01ID requested
12021-12-30 14:27:25announced
22023-05-14 14:17:47announced2023-05-14: Updated project metadata.
Publication List
Dhenin J, Borges Lima D, Dupr, é M, Chamot-Rooke J, TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics. Bioinformatics, 38(4):1136-1138(2022) [pubmed]
Keyword List
ProteomeXchange project tag: EPIC-XS
submitter keyword: visualization tool,Top-down proteomics, LC-MS/MS
Contact List
contact affiliationMass Spectrometry for Biology Unit CNRS USR2000 Institut Pasteur France
contact emailjulia.chamot-rooke@pasteur.fr
lab head
contact affiliationMass Spectrometry for Biology Unit Institut Pasteur Paris
contact emailjonathan.dhenin@pasteur.fr
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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