PXD020284 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Quantitative analysis of tyrosine phosphorylation from FFPE tissues reveals patient specific signaling networks |
Description | The aim of this study was to characterize tyrosine phosphorylation from FFPE tissues. Global phosphoproteomics, global proteomics and tyrosine phosphorylation were measured using quantitative LC-MS/MS based on TMT labeling. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:28:53.601.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD020284 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Ishwar Kohale |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | TMT6plex-126 reporter+balance reagent acylated residue; phosphorylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF; Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-07-09 17:22:15 | ID requested | |
1 | 2021-09-09 07:00:16 | announced | |
⏵ 2 | 2024-10-22 05:28:58 | announced | 2024-10-22: Updated project metadata. |
Publication List
Kohale IN, Burgenske DM, Mladek AC, Bakken KK, Kuang J, Boughey JC, Wang L, Carter JM, Haura EB, Goetz MP, Sarkaria JN, White FM, Quantitative Analysis of Tyrosine Phosphorylation from FFPE Tissues Reveals Patient-Specific Signaling Networks. Cancer Res, 81(14):3930-3941(2021) [pubmed] |
10.1158/0008-5472.can-21-0214; |
10.6019/PXD020284; |
Keyword List
submitter keyword: LC-MS/MS, Phosphotyrosine, FFPE, Afatinib |
Contact List
Forest Michael White |
contact affiliation | Department of Biological Engineering and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, United States |
contact email | fwhite@mit.edu |
lab head | |
Ishwar Kohale |
contact affiliation | Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA |
contact email | ikohale@mit.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD020284 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD020284
- Label: PRIDE project
- Name: Quantitative analysis of tyrosine phosphorylation from FFPE tissues reveals patient specific signaling networks