Updated project metadata. - Identification of proteins whose abundance was altered by two DNA methyltransferases (XvDMT1 and XvDMT2) in Xanthomonas campestris pv. vesicatoria strain 85-10. - Shotgun proteomic analysis was used - Three strains were used with three biological replicates (total 9 samples). W+V: the wild-type strain carrying an empty vector. 2165OE: XvDMT1-overexpressing strain. 2405OE: XvDMT2-overexpressing strain.