PXD019487

PXD019487 is an original dataset announced via ProteomeXchange.

Title	CTCF loss has limited effects on genome architecture in Drosophila despite critical regulatory functions.
Description	Proteins co-purifying with recombinantly purified and N-terminally GFP-3C-tagged CTCF N-terminus (amino acids 1-293) produced in bacteria were identified by incubating the tagged bait with soluble nuclear protein extracts from 0-12h hour-old wildtype (OregonR strain) Drosophila melanogaster embryos.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:17:57.456.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Manfredo Quadroni
SpeciesList	scientific name: Drosophila melanogaster (Fruit fly); NCBI TaxID: 7227;
ModificationList	monohydroxylated residue; acetylated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-01 03:10:44	ID requested
1	2021-03-04 12:39:55	announced
2	2021-08-06 02:21:14	announced	2021-08-06: Updated publication reference for PubMed record(s): 33579945.
⏵ 3	2024-10-22 05:17:58	announced	2024-10-22: Updated project metadata.

10.1038/s41467-021-21366-2;

Kaushal A, Mohana G, Dorier J, Ö, zdemir I, Omer A, Cousin P, Semenova A, Taschner M, Dergai O, Marzetta F, Iseli C, Eliaz Y, Weisz D, Shamim MS, Guex N, Lieberman Aiden E, Gambetta MC, CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions. Nat Commun, 12(1):1011(2021) [pubmed]

submitter keyword: genome organization, silencers

Maria Cristina Gambetta
contact affiliation	Center for Integrative Genomics University of Lausanne Genopode building, quartier Sorge 1015 Lausanne, Switzerland
contact email	mariacristina.gambetta@unil.ch
lab head
Manfredo Quadroni
contact affiliation	University of Lausanne
contact email	manfredo.quadroni@unil.ch
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/01/PXD019487

PRIDE project URI

• PRIDE
  1. PXD019487
     1. Label: PRIDE project
     2. Name: CTCF loss has limited effects on genome architecture in Drosophila despite critical regulatory functions.