PXD018762

PXD018762 is an original dataset announced via ProteomeXchange.

Title	Integrated multi-omics reveals common properties underlying stress granule and P-body formation
Description	Non-membrane-bound compartments such as mRNA processing bodies (PBs) and stress granules (SGs) play important roles in the regulation of gene expression following environmental stresses. We have systematically determined the protein and mRNA composition of PBs and SGs formed in response to a common stress condition imposed by glucose depletion. We find that high molecular weight (HMW) complexes exist prior to glucose depletion that may act as seeds for the further condensation of proteins forming mature PBs and SGs. Both before and after glucose depletion, these HMW complexes are enriched for proteins containing low complexity and RNA binding domains. The mRNA content of these HMW complexes is enriched for long, structured mRNAs that become more poorly translated following glucose depletion. Many proteins and mRNAs are shared between PBs and SGs, suggesting a complex pattern of functional protein and mRNA pools exist in different condensates. Even where the precise identity of mRNAs and proteins localizing to PBs and SGs is distinct, the mRNAs and proteins share common biophysical and chemical features that likely trigger their phase separation.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:30:09.570.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michael Nelson
SpeciesList	scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-23 05:27:47	ID requested
1	2021-11-03 08:02:25	announced
⏵ 2	2024-10-22 05:30:10	announced	2024-10-22: Updated project metadata.

Kershaw CJ, Nelson MG, Lui J, Bates CP, Jennings MD, Hubbard SJ, Ashe MP, Grant CM, Integrated multi-omics reveals common properties underlying stress granule and P-body formation. RNA Biol, 18(sup2):655-673(2021) [pubmed]

10.1080/15476286.2021.1976986;

submitter keyword: Stress Granule purification, P-body purification,Saccharomyces cerevisiae

Professor Simon Hubbard
contact affiliation	Division of Evolution and Genomic Sciences School of Biological Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Oxford Road, Manchester, M13 9PT
contact email	simon.hubbard@manchester.ac.uk
lab head
Michael Nelson
contact affiliation	The University of Manchester
contact email	42mnelson@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD018762

PRIDE project URI

• PRIDE
  1. PXD018762
     1. Label: PRIDE project
     2. Name: Integrated multi-omics reveals common properties underlying stress granule and P-body formation