PXD013655 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Systems Biology of Lipid Accumulating Organisms |
Description | Characterization of microbial communities at the genomic, transcriptomic, proteomic and metabolomic levels, with a special interest on lipid accumulating bacterial populations, which are naturally enriched in biological wastewater treatment systems and may be harnessed for the conversion of mixed lipid substrates (wastewater) into biodiesel. The project aims to elucidate the genetic blueprints and the functional relevance of specific populations within the community. It focuses on within-population genetic and functional heterogeneity, trying to understand how fine-scale variations contribute to differing lipid accumulating phenotypes. Insights from this project will contribute to the understanding the functioning of microbial ecosystems, and improve optimization and modeling strategies for current and future biological wastewater treatment processes. This project contains datasets derived from the same biological wastewater treatment plant. The data includes metagenomes, metatranscriptomes, metaproteomes and organisms isolated in pure cultures. Characterization of microbial communities at the genomic, transcriptomic, proteomic and metabolomic levels, with a special interest on lipid accumulating bacterial populations, which are naturally enriched in biological wastewater treatment systems and may be harnessed for the conversion of mixed lipid substrates (wastewater) into biodiesel. The project aims to elucidate the genetic blueprints and the functional relevance of specific populations within the community. It focuses on within-population genetic and functional heterogeneity, trying to understand how fine-scale variations contribute to differing lipid accumulating phenotypes. Insights from this project will contribute to the understanding the functioning of microbial ecosystems, and improve optimization and modeling strategies for current and future biological wastewater treatment processes. This project contains datasets derived from the same biological wastewater treatment plant. The data includes metagenomes, metatranscriptomes, metaproteomes and organisms isolated in pure cultures. |
HostingRepository | PRIDE |
AnnounceDate | 2020-08-19 |
AnnouncementXML | Submission_2020-08-18_23:03:59.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD013655 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Benoit Kunath |
SpeciesList | scientific name: wastewater metagenome; NCBI TaxID: 527639; |
ModificationList | Oxidation; Carbamidomethyl |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-04-29 01:04:46 | ID requested | |
⏵ 1 | 2020-08-18 23:03:59 | announced | |
2 | 2022-02-21 10:00:07 | announced | 2022-02-21: Updated publication reference for PubMed record(s): 33139880. |
3 | 2022-02-21 10:01:25 | announced | 2022-02-21: Updated publication reference for PubMed record(s): 33139880.
2022-02-21: Updated publication reference for PubMed record(s): 33139880, 33077707. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: metaproteomics |
Activated sludge |
Time Series |
Lipid Accumulation |
CRISPR |
Metagenomics |
Phages |
Plamids |
Contact List
Paul Wilmes |
contact affiliation | Eco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg |
contact email | paul.wilmes@uni.lu |
lab head | |
Benoit Kunath |
contact affiliation | LCSB |
contact email | benoit.kunath@uni.lu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD013655
- Label: PRIDE project
- Name: Systems Biology of Lipid Accumulating Organisms