PXD006299

PXD006299 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Characterisation of protein ubiquitination using UbiSite technology
Description	We present a novel immune-affinity-based method UbiSite for capture and further identification of ubiquitination sites by MS for any cell line or tissue sample. Implementing the UbiSite methodology for a large-scale experiment we successfully mapped 62000 unique ubiquitination sites on protein substrates for two different human cell lines.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:02:46.937.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Iñigo Barrio
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	ubiquitination signature dipeptidyl lysine; phosphorylated residue; monohydroxylated residue; acetylated residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-04-13 08:11:40	ID requested
1	2018-07-03 10:38:00	announced
⏵ 2	2024-10-22 04:02:47	announced	2024-10-22: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

curator keyword: Technical, Biological
submitter keyword: UbiSite
site specific ubiquitination
ubiquitination sites
N-terminal ubiquitination
proteasomal inhibition
b-AP15
Bortezomib

curator keyword: Technical, Biological

submitter keyword: UbiSite

site specific ubiquitination

ubiquitination sites

N-terminal ubiquitination

proteasomal inhibition

b-AP15

Bortezomib

Contact List

Blagoy Blagoev
contact affiliation	Department of Biochemistry and Molecular Biology, University of Southern Denmark (SDU)
contact email	bab@bmb.sdu.dk
lab head
Iñigo Barrio
contact affiliation	SDU
contact email	inigob@bmb.sdu.dk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD006299
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD006299

PRIDE project URI

Repository Record List

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