PXD006004 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | RNA polymerase II Immunoprecipitation from Arabidopsis LC-MSMS |
Description | RNA polymerase II (Pol II) was immunoprecipitated from Arabidopsis thaliana seedlings, using antibodies that specifically recognize: 1) C’ terminal Domain (CTD), 2) CTD Serine 5 Phosphorylation and 3) CTD Serine 2 Phosphorylation. Proteins that co-immunoprecipitate with different Pol II pools were analysed. |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-17 |
AnnouncementXML | Submission_2018-10-17_00:35:46.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Nicolas Nalpas |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | phosphorylated residue |
Instrument | LTQ Orbitrap XL |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-03-03 02:04:23 | ID requested | |
⏵ 1 | 2018-10-17 00:35:47 | announced | |
Publication List
Speth C, Szabo EX, Martinho C, Collani S, Zur Oven-Krockhaus S, Richter S, Droste-Borel I, Macek B, Stierhof YD, Schmid M, Liu C, Laubinger S, Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes. Elife, 7():(2018) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Pol II, Arabidopsis, LC-MSMS |
Contact List
Sascha Laubinger |
contact affiliation | AG Evolutionäre Genetik der Pflanzen Fak. V - Institut für Biologie und Umweltwissenschaften (IBU) Carl von Ossietzky Universität Oldenburg Carl von Ossietzky-Str. 9-11 26111 Oldenburg |
contact email | sascha.laubinger@uni-oldenburg.de |
lab head | |
Nicolas Nalpas |
contact affiliation | Tuebingen University |
contact email | nalpas.nicolas@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD006004 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006004
- Label: PRIDE project
- Name: RNA polymerase II Immunoprecipitation from Arabidopsis LC-MSMS