PXD004723 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A systematic proteogenomic approach to deciphering of the missing proteins: the example of newly uncovered NHERF1 function associated with human reproductive disorder |
Description | We propose and demonstrate a systematic approach designed to combine stringent criteria for claims of missing protein (MP) identification with extensive annotation as critical components of the discovery and functional validation of MPs. |
HostingRepository | PRIDE |
AnnounceDate | 2018-01-05 |
AnnouncementXML | Submission_2018-01-05_01:32:59.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jin-Young Cho |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-08-08 03:59:36 | ID requested | |
⏵ 1 | 2018-01-05 01:33:00 | announced | |
Publication List
Na K, Shin H, Cho JY, Jung SH, Lim J, Lim JS, Kim EA, Kim HS, Kang AR, Kim JH, Shin JM, Jeong SK, Kim CY, Park JY, Chung HM, Omenn GS, Hancock WS, Paik YK, Systematic Proteogenomic Approach To Exploring a Novel Function for NHERF1 in Human Reproductive Disorder: Lessons for Exploring Missing Proteins. J Proteome Res, 16(12):4455-4467(2017) [pubmed] |
Keyword List
ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project |
submitter keyword: Human, placental tissues, LC-MS/MS |
Contact List
Young-Ki Paik |
contact affiliation | Yonsei Proteome Research Center |
contact email | paikyk@yonsei.ac.kr |
lab head | |
Jin-Young Cho |
contact affiliation | Yonsei Proteome Research Center |
contact email | chojy@proteomix.org |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD004723 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD004723
- Label: PRIDE project
- Name: A systematic proteogenomic approach to deciphering of the missing proteins: the example of newly uncovered NHERF1 function associated with human reproductive disorder