<?xml version="1.0" encoding="UTF-8" standalone="yes"?> <ProteomeXchangeDataset id="PXD000548" formatVersion="1.2.0" xsi:noNamespaceSchemaLocation="proteomeXchange-1.2.0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> <CvList> <Cv fullName="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" id="MS"/> <Cv fullName="PRIDE" uri="http://code.google.com/p/ebi-pride/source/browse/trunk/pride-core/schema/pride_cv.obo" id="PRIDE"/> <Cv fullName="PSI-MOD" uri="http://psidev.cvs.sourceforge.net/psidev/psi/mod/data/PSI-MOD.obo" id="MOD"/> <Cv fullName="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" id="UNIMOD"/> </CvList> <ChangeLog> <ChangeLogEntry date="2014-07-24">Updated project metadata.</ChangeLogEntry> </ChangeLog> <DatasetSummary announceDate="2014-07-24" hostingRepository="PRIDE" title="Proteome analyses of the human anterior temporal lobe"> <Description>Characterization of the human Anterior Temporal Lobe and Corpus Callosum: C-HPP</Description> <ReviewLevel> <cvParam cvRef="PRIDE" accession="PRIDE:0000414" name="Peer-reviewed dataset"/> </ReviewLevel> <RepositorySupport> <cvParam cvRef="PRIDE" accession="PRIDE:0000417" name="Unsupported dataset by repository"/> </RepositorySupport> </DatasetSummary> <DatasetIdentifierList> <DatasetIdentifier> <cvParam cvRef="MS" accession="MS:1001919" name="ProteomeXchange accession number" value="PXD000548"/> </DatasetIdentifier> </DatasetIdentifierList> <DatasetOriginList> <DatasetOrigin> <cvParam cvRef="PRIDE" accession="PRIDE:0000402" name="Original data"/> </DatasetOrigin> </DatasetOriginList> <SpeciesList> <Species> <cvParam cvRef="MS" accession="MS:1001469" name="taxonomy: scientific name" value="Homo sapiens (Human)"/> <cvParam cvRef="MS" accession="MS:1001467" name="taxonomy: NCBI TaxID" value="9606"/> </Species> </SpeciesList> <InstrumentList> <Instrument id="Instrument_1"> <cvParam cvRef="MS" accession="MS:1000449" name="LTQ Orbitrap"/> </Instrument> </InstrumentList> <ModificationList> <cvParam cvRef="MOD" accession="MOD:00425" name="monohydroxylated residue"/> <cvParam cvRef="MOD" accession="MOD:00397" name="iodoacetamide derivatized residue"/> </ModificationList> <ContactList> <Contact id="project_submitter"> <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Daniel Martins-de-Souza"/> <cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="danms90@gmail.com"/> <cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="Chemical Engineering and Biotechnology"/> <cvParam cvRef="MS" accession="MS:1002037" name="dataset submitter"/> </Contact> <Contact id="project_lab_head"> <cvParam cvRef="MS" accession="MS:1002332" name="lab head"/> <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Daniel Martins-de-Souza"/> <cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="danms90@gmail.com"/> <cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="Ludwig-Maximiliam-University of Munich"/> </Contact> </ContactList> <PublicationList> <Publication id="PMID24274931"> <cvParam cvRef="MS" accession="MS:1000879" name="PubMed identifier" value="24274931"/> <cvParam cvRef="PRIDE" accession="PRIDE:0000400" name="Reference" value="Martins-de-Souza D, Carvalho PC, Schmitt A, Junqueira M, Nogueira FC, Turck CW, Domont GB. Deciphering the human brain proteome: characterization of the anterior temporal lobe and corpus callosum as part of the Chromosome 15-centric Human Proteome Project. J Proteome Res. 2014 Jan 3;13(1):147-57"/> </Publication> </PublicationList> <KeywordList> <cvParam cvRef="MS" accession="MS:1001925" name="submitter keyword" value="brain; anterior temporal lobe; Human Proteome Project; chromosome-based HPP"/> <cvParam cvRef="MS" accession="MS:1002340" name="ProteomeXchange project tag" value="Chromosome-centric Human Proteome Project (C-HPP)"/> <cvParam cvRef="MS" accession="MS:1002340" name="ProteomeXchange project tag" value="Human Proteome Project"/> </KeywordList> <FullDatasetLinkList> <FullDatasetLink> <cvParam cvRef="PRIDE" accession="PRIDE:0000411" name="Dataset FTP location" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548"/> </FullDatasetLink> <FullDatasetLink> <cvParam cvRef="MS" accession="MS:1001930" name="PRIDE project URI" value="http://www.ebi.ac.uk/pride/archive/projects/PXD000548"/> </FullDatasetLink> </FullDatasetLinkList> <DatasetFileList> <DatasetFile id="FILE_0" name="dms_17Jul13_ATL_Proteome_Slice01_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice01_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_1" name="dms_17Jul13_ATL_Proteome_Slice01_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice01_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_2" name="dms_17Jul13_ATL_Proteome_Slice02_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice02_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_3" name="dms_17Jul13_ATL_Proteome_Slice02_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice02_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_4" name="dms_17Jul13_ATL_Proteome_Slice03_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice03_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_5" name="dms_17Jul13_ATL_Proteome_Slice03_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice03_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_6" name="dms_17Jul13_ATL_Proteome_Slice04_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice04_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_7" name="dms_17Jul13_ATL_Proteome_Slice04_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice04_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_8" name="dms_17Jul13_ATL_Proteome_Slice05_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice05_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_9" name="dms_17Jul13_ATL_Proteome_Slice05_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice05_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_10" name="dms_17Jul13_ATL_Proteome_Slice06_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice06_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_11" name="dms_17Jul13_ATL_Proteome_Slice06_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice06_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_12" name="dms_17Jul13_ATL_Proteome_Slice07_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice07_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_13" name="dms_17Jul13_ATL_Proteome_Slice07_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice07_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_14" name="dms_17Jul13_ATL_Proteome_Slice08_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice08_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_15" name="dms_17Jul13_ATL_Proteome_Slice08_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice08_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_16" name="dms_17Jul13_ATL_Proteome_Slice09_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice09_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_17" name="dms_17Jul13_ATL_Proteome_Slice09_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice09_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_18" name="dms_17Jul13_ATL_Proteome_Slice10_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice10_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_19" name="dms_17Jul13_ATL_Proteome_Slice10_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice10_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_20" name="dms_17Jul13_ATL_Proteome_Slice11_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice11_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_21" name="dms_17Jul13_ATL_Proteome_Slice11_02.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice11_02.RAW"/> </DatasetFile> <DatasetFile id="FILE_22" name="dms_17Jul13_ATL_Proteome_Slice12_01.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice12_01.RAW"/> </DatasetFile> <DatasetFile id="FILE_23" name="dms_17Jul13_ATL_Proteome_Slice12_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice12_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_24" name="dms_17Jul13_ATL_Proteome_Slice13_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice13_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_25" name="dms_17Jul13_ATL_Proteome_Slice13_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice13_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_26" name="dms_17Jul13_ATL_Proteome_Slice14_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice14_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_27" name="dms_17Jul13_ATL_Proteome_Slice14_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice14_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_28" name="dms_17Jul13_ATL_Proteome_Slice15_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice15_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_29" name="dms_17Jul13_ATL_Proteome_Slice15_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice15_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_30" name="dms_17Jul13_ATL_Proteome_Slice16_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice16_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_31" name="dms_17Jul13_ATL_Proteome_Slice16_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice16_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_32" name="dms_17Jul13_ATL_Proteome_Slice17_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice17_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_33" name="dms_17Jul13_ATL_Proteome_Slice17_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice17_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_34" name="dms_17Jul13_ATL_Proteome_Slice18_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice18_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_35" name="dms_17Jul13_ATL_Proteome_Slice18_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice18_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_36" name="dms_17Jul13_ATL_Proteome_Slice19_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice19_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_37" name="dms_17Jul13_ATL_Proteome_Slice19_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice19_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_38" name="dms_17Jul13_ATL_Proteome_Slice20_01-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice20_01-.RAW"/> </DatasetFile> <DatasetFile id="FILE_39" name="dms_17Jul13_ATL_Proteome_Slice20_02-.RAW"> <cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/dms_17Jul13_ATL_Proteome_Slice20_02-.RAW"/> </DatasetFile> <DatasetFile id="FILE_40" name="ATL_1.sepr"> <cvParam cvRef="PRIDE" accession="PRIDE:0000408" name="Search engine output file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/ATL_1.sepr"/> </DatasetFile> <DatasetFile id="FILE_41" name="ATL_2.sepr"> <cvParam cvRef="PRIDE" accession="PRIDE:0000408" name="Search engine output file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000548/ATL_2.sepr"/> </DatasetFile> </DatasetFileList> <RepositoryRecordList> <RepositoryRecord name="Proteome analyses of the human anterior temporal lobe" label="PRIDE project" recordID="PXD000548" repositoryID="PRIDE" uri="http://www.ebi.ac.uk/pride/archive/projects/PXD000548"/> </RepositoryRecordList> </ProteomeXchangeDataset>