PXD000045

PXD000045 is an original dataset announced via ProteomeXchange.

Title	LC-MS/MS of cultured Mycobacterium tuberculosis in a hypoxia/reaeration timecourse
Description	Mycobacterium tuberculosis samples were collected during oxygen starvation and reaeration. The samples were solubized with urea, digested with trypsin, then desalted with a C18 96-well plate prior to LC-MS/MS analysis.
HostingRepository	PRIDE
AnnounceDate	2013-07-11
AnnouncementXML	Submission_2013-07-11_01:41:37.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000045
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
Reprocessed datasets that are derived from this dataset	RPXD000668
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Gingras Olivier
SpeciesList	scientific name: Mycobacterium tuberculosis; NCBI TaxID: 1773;
ModificationList	monohydroxylated residue: 15.994915; acetylated residue: 42.010565; iodoacetic acid derivatized amino-terminal residue: 58.005479
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2012-10-02 04:14:15	ID requested
1	2013-06-25 08:05:58	announced
1	2014-07-28 00:23:03	announced
⏵ 2	2013-07-11 01:41:37	announced	Add reference

Galagan JE, Minch K, Peterson M, Lyubetskaya A, Azizi E, Sweet L, Gomes A, Rustad T, Dolganov G, Glotova I, Abeel T, Mahwinney C, Kennedy AD, Allard R, Brabant W, Krueger A, Jaini S, Honda B, Yu WH, Hickey MJ, Zucker J, Garay C, Weiner B, Sisk P, Stolte C, Winkler JK, Van de Peer Y, Iazzetti P, Camacho D, Dreyfuss J, Liu Y, Dorhoi A, Mollenkopf HJ, Drogaris P, Lamontagne J, Zhou Y, Piquenot J, Park ST, Raman S, Kaufmann SH, Mohney RP, Chelsky D, Moody DB, Sherman DR, Schoolnik GK, The Mycobacterium tuberculosis regulatory network and hypoxia. Nature, 499(7457):178-83(2013) [pubmed]

submitter keyword: Mycobacterium tuberculosis, LC-MSMS, hypoxia

Gingras Olivier
contact affiliation	Caprion Proteome Inc.
contact email	ogingras@caprion.com
Gary K. Schoolnik
contact attribute	schoolnik@stanford.edu
contact affiliation	Stanford Medical School
contact email	schoolnik@stanford.edu
Daniel Chelsky
contact attribute	dchelsky@caprion.com
contact affiliation	Caprion Proteome Inc.
contact email	dchelsky@caprion.com

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/06/PXD000045

• PRIDE
  1. 27370
     1. InstrumentRef: INSTRUMENT_1
     2. Label: SG9 control, hypoxic, and re-aeration samples
     3. ModificationList: monohydroxylated residue, acetylated residue, iodoacetic acid derivatized amino-terminal residue,
     4. Name: LC-MS/MS of SG9 hypoxia/re-aeration timecourse
     5. PublicationRef: PMID23823726