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RPXD034695

RPXD034695 is container for one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.

Reanalysis Container Summary

Title	PXD018357-1 Inhibition of growth factor signaling prevents SARS-CoV-2 replication [Reanalysis: PXD018357]
Description	Caco-2 cells were mock-infected or infected with SARS-CoV-2 patient isolates (in biological quintruplicates) for one hour, washed, and incubated for 24 hours before cell harvest. Extracted proteins were digested and split to 1) carry out whole-cell proteomics of a tandem mass tag (TMT) 10-plex samples using liquid chromatography synchronous precursor selection mass spectromety (LC-SPS-MS3), or 2) use Fe-NTA phosphopeptide enrichment (achieving 98% enrichment) for phospho proteome analyses of a TMT 10-plex analyzed by LC-MS2 First 5 channels = control Last 5 channels = infected [Original project description]
HostingRepository	jPOST
AnnounceDate	2023-03-25
AnnouncementXML	Submission_2023-03-25_06:46:48.105.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/RPXD034695
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Reanalysis of PXD018357
RepositorySupport	Supported dataset by repository
PrimarySubmitter	jPOST reanalysis
SpeciesList	scientific name: cell culture; NCBI TaxID: BTO:0000214;
ModificationList	S-carboxamidomethyl-L-cysteine; unknown modification; unknown modification; alpha-amino acetylated residue; L-methionine sulfoxide
Instrument	Orbitrap Fusion Lumos

Dataset History

Reanalysis	Revision	Datetime	Status	Title / ChangeLog Entry
	0	2022-06-19 17:30:04	ID requested
0	1	2023-03-25 06:46:48	announced	PXD018357-1 Inhibition of growth factor signaling prevents SARS-CoV-2 replication [Reanalysis: PXD018357]

Publication List

no publication

no publication

Keyword List

submitter keyword: reanalysis, TMT, SARS-CoV-2, COVID-19, Infection, Phospho

submitter keyword: reanalysis, TMT, SARS-CoV-2, COVID-19, Infection, Phospho

Contact List

Yasushi Ishihama
lab head
jPOST reanalysis
contact affiliation	jPOST
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001779/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001779/