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PXD053342

PXD053342 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleA synthetic antibiotic class with a deeply-optimized design for overcoming bacterial resistance
DescriptionThe lack of new drugs that are effective against antibiotic-resistant bacteria has caused increasing concern in global public health. Based on this study, we report development of a modified antimicrobial drug through structure-based drug design (SBDD) and modular synthesis. The optimal modified compound, F8, was identified, which demonstrated in vitro and in vivo broad-spectrum antibacterial activity against drug-resistant bacteria and effectively mitigated the development of resistance. F8 exhibits significant bactericidal activity against bacteria resistant to antibiotics such as methicillin, polymyxin B, florfenicol (FLO), doxycycline, ampicillin and sulfamethoxazole. In a mouse model of drug-resistant bacteremia, F8 was found to increase survival and significantly reduce bacterial load in infected mice. Multi-omics analysis (transcriptomics, proteomics, and metabolomics) have indicated that ornithine carbamoyl transferase (arcB) is a antimicrobial target of F8. Further molecular docking, Isothermal Titration Calorimetry (ITC), and Differential Scanning Fluorimetry (DSF) studies verified arcB as a effective target for F8. Finally, mechanistic studies suggest that F8 competitively binds to arcB, disrupting the bacterial cell membrane and inducing a certain degree of oxidative damage. Here, we report F8 as a promising candidate drug for the development of antibiotic formulations to combat antibiotic-resistant bacteria-associated infections.
HostingRepositoryiProX
AnnounceDate2024-06-24
AnnouncementXMLSubmission_2024-06-24_01:43:39.232.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterJin Feng
SpeciesList scientific name: Staphylococcus aureus; NCBI TaxID: 1280;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive HF-X
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-06-24 01:42:12ID requested
12024-06-24 01:43:39announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: antibiotic resistance
structure-based drug design
arcB
bacteria
drug
target.
Contact List
Jin Feng
contact affiliationHuazhong Agricultural University
contact emailfengjin@webmail.hzau.edu.cn
lab head
Jin Feng
contact affiliationHuazhong Agricultural University
contact emailfengjin@webmail.hzau.edu.cn
dataset submitter
Full Dataset Link List
iProX dataset URI