PXD047723
PXD047723 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Plasma-derived extracellular vesicles from patients with liver cirrhosis and hepatocellular carcinoma |
Description | Quantitative label-free proteomic analysis of extracellular vesicles. A pool of isolated proteins from extracellular vesicles (EVs) was performed for each sample group, namely healthy participants (HP), liver cirrhosis (LC), and hepatocellular carcinoma (HCC), split into three biological replicates. Then, samples were digested with trypsin, and the peptides were subjected to Nano LC-MS/MS Analysis and Mass Spectrometry. Nine raw MS files were analyzed and searched against the human protein database based on the species of the samples using Maxquant. The parameters were set as follows: the protein modifications were carbamidomethylation (C) (fixed), oxidation (M) (variable); the enzyme specificity was set to trypsin; the maximum missed cleavage was set to 2; the precursor ion mass tolerance was set to 10 ppm, and MS/MS tolerance was 0.5 Da. |
HostingRepository | jPOST |
AnnounceDate | 2024-07-09 |
AnnouncementXML | Submission_2024-07-09_12:57:03.010.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Verónica Rocío Vásquez Garzón |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2023-12-11 10:26:38 | ID requested | |
⏵ 1 | 2024-07-09 12:57:03 | announced |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: extracelular vesicles, liver cirrhosis, hepatocellular carcinoma |
Contact List
PhD. Verónica Rocío Vásquez-Garzón | |
---|---|
lab head | |
Verónica Rocío Vásquez Garzón | |
contact affiliation | Facultad de medicina y cirugía, Universidad Autónoma Benito Juárez de Oaxaca |
dataset submitter |
Full Dataset Link List
jPOST dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST002412/ |