PXD029035 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic analysis of residues from experimental ceramics |
Description | Ceramic vessels were used to cook fish/duck/black grouse, and proteomic studies were conducted on the ceramics to study how the choice of various database can affect the species identification and whether they can allow us to differentiate between fish and bird processing in ceramic vessels. We also employed a novel urea-GuHCl DES as the extraction reagent, and compared its efficiency with the conventional 6M GuHCl used for protein extraction (data available in project PXD027720). The samples used were same as the samples used in Peoject PXD027720, with a urea-GuHCl DES used as the extraction reagent instead of 6M GuHCl solution. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:53:38.148.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Manasij Pal Chowdhury |
SpeciesList | scientific name: Cyprinidae; NCBI TaxID: 7953; scientific name: Esocidae; NCBI TaxID: 8008; scientific name: Anatidae; NCBI TaxID: 8830; scientific name: Phasianidae; NCBI TaxID: 9005; |
ModificationList | iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-10-10 23:02:46 | ID requested | |
1 | 2022-11-11 04:01:19 | announced | |
⏵ 2 | 2023-11-14 08:53:38 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Deep Eutectic Solvent (DES), Cross-species proteomics,Residue analysis, Protein extraction, Archaeological potttery, LC-MS/MS |
Contact List
Dr. Michael Buckley |
contact affiliation | Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK Interdisciplinary Centre for Ancient Life, Department of Earth and Environmental Sciences, University of Manchester, Oxford Road 131, Manchester, M13 9PL, UK |
contact email | m.buckley@manchester.ac.uk |
lab head | |
Manasij Pal Chowdhury |
contact affiliation | University of Manchester |
contact email | manasij.palchowdhury@postgrad.manchester.ac.uk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD029035 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD029035
- Label: PRIDE project
- Name: Proteomic analysis of residues from experimental ceramics