<<< Full experiment listing

PXD029035

PXD029035 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteomic analysis of residues from experimental ceramics
DescriptionCeramic vessels were used to cook fish/duck/black grouse, and proteomic studies were conducted on the ceramics to study how the choice of various database can affect the species identification and whether they can allow us to differentiate between fish and bird processing in ceramic vessels. We also employed a novel urea-GuHCl DES as the extraction reagent, and compared its efficiency with the conventional 6M GuHCl used for protein extraction (data available in project PXD027720). The samples used were same as the samples used in Peoject PXD027720, with a urea-GuHCl DES used as the extraction reagent instead of 6M GuHCl solution.
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_08:53:38.148.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterManasij Pal Chowdhury
SpeciesList scientific name: Cyprinidae; NCBI TaxID: 7953; scientific name: Esocidae; NCBI TaxID: 8008; scientific name: Anatidae; NCBI TaxID: 8830; scientific name: Phasianidae; NCBI TaxID: 9005;
ModificationListiodoacetamide derivatized residue
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-10-10 23:02:46ID requested
12022-11-11 04:01:19announced
22023-11-14 08:53:38announced2023-11-14: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Deep Eutectic Solvent (DES), Cross-species proteomics,Residue analysis, Protein extraction, Archaeological potttery, LC-MS/MS
Contact List
Dr. Michael Buckley
contact affiliationManchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK Interdisciplinary Centre for Ancient Life, Department of Earth and Environmental Sciences, University of Manchester, Oxford Road 131, Manchester, M13 9PL, UK
contact emailm.buckley@manchester.ac.uk
lab head
Manasij Pal Chowdhury
contact affiliationUniversity of Manchester
contact emailmanasij.palchowdhury@postgrad.manchester.ac.uk
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD029035
PRIDE project URI
Repository Record List
[ + ]