PXD025997

PXD025997 is an original dataset announced via ProteomeXchange.

Title	Genome-wide identification and characterization of small peptides in maize
Description	Small peptides (sPeptides), a class of biological molecules of less than 100 amio acids encoded by small open reading frames (sORFs), play important roles in multiple biological process. Here, we conducted a comprehensive study using mRNA-seq, Ribo-seq, and Mass Spectrometry (MS) on six tissues (each with at least two replicates) of maize, set up a bioinformatic pipeline, and performed a genome-wide scan of sORFs and sPeptides in maize. Our study sets up a guildline for the genome-wide scan of sORFs and sPeptides in plants by integrating Ribo-seq, and MS data, provides a more comprehensive resource of functional sPeptides in maize, and sheds light on the complex biological system of plants in a new perspective.
HostingRepository	PRIDE
AnnounceDate	2021-05-30
AnnouncementXML	Submission_2021-05-30_02:20:28.843.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Wanchao Zhu
SpeciesList	scientific name: Zea mays (Maize); NCBI TaxID: 4577;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2021-05-13 03:30:19	ID requested
⏵ 1	2021-05-30 02:20:29	announced

Dataset with its publication pending

submitter keyword: Maize

Small open reading frame (sORF)

Small Peptide (sPeptide)

Ribo-seq

Mass spectrometry (MS)

Lin Li
contact affiliation	Huazhong Agricultural University
contact email	hzaulilin@mail.hzau.edu.cn
lab head
Wanchao Zhu
contact affiliation	Huazhong Agriculture University
contact email	qfdwxzwc@163.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD025997

PRIDE project URI

• PRIDE
  1. PXD025997
     1. Label: PRIDE project
     2. Name: Genome-wide identification and characterization of small peptides in maize