PXD022655
PXD022655 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Comparative Proteomic Analysis of English Walnut (Juglans regia L.) Pellicle Tissues Reveal the Regulation of Nut Quality Attributes |
| Description | Walnuts (Juglans regia L.) are a valuable dietary source of polyphenols and lipids, with increasing worldwide consumption. California is a major producer, with Chandler and Tulare among the cultivars more widely grown. Chandler produces kernels with extra light color at a higher frequency than , gaining consumer preference. Here we performed a deep comparative proteome analysis of kernel pellicle tissue from these two valued genotypes, at three harvest maturities, detecting a total of 4,937 J. regia proteins. Late and early maturity stages were compared for each cultivar, revealing many developmental responses common or specific for each cultivar. Top protein biomarkers for each developmental stage were also selected based on larger fold-change differences and lower variance among replicates. Comparison between the genotypes also revealed the common and specific protein repertoires, totaling 321 pellicle proteins with differential abundance. Additionally, in all maturity stages several allergens were among the most abundant proteins, which is of importance for food safety. The proteomics data provides clues on antioxidant, secondary, and hormonal metabolism that could be involved in the loss of quality in the pellicles during processing for commercialization. |
| HostingRepository | MassIVE |
| AnnounceDate | 2023-11-01 |
| AnnouncementXML | Submission_2023-11-01_11:16:02.076.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Brett Phinney |
| SpeciesList | scientific name: Juglans regia; common name: English walnut; NCBI TaxID: 51240; |
| ModificationList | TMT6plex; Carbamidomethyl; Oxidation |
| Instrument | Orbitrap Fusion Lumos |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2020-11-20 09:44:21 | ID requested | |
| ⏵ 1 | 2023-11-01 11:16:02 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: English Walnut |
Contact List
| Abhaya M. Dandekar | |
|---|---|
| contact affiliation | University of California Davis |
| contact email | amdandekar@ucdavis.edu |
| lab head | |
| Brett Phinney | |
| contact affiliation | UC Davis |
| contact email | brettsp@ucdavis.edu |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000086493/ |
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