PXD012062

PXD012062 is an original dataset announced via ProteomeXchange.

Title	Metaproteomics of plastic biofilms in marine environments
Description	To characterize the taxonomic and functional diversity of biofilms on plastics in marine environments, plastic pellets (PE and PS, ø 3mm) and wooden pellets (as organic control) were incubated at three stations: at the Baltic Sea coast in Heiligendamm (coast), in a dead branch of the river Warnow in Warnemünde (inlet), and in the Warnow estuary (estuary). After two weeks of incubation, all pellets were frozen for subsequent metagenome sequencing and metaproteomic analysis. Biofilm communities in the samples were compared on multiple levels: a) between the two plastic materials, b) between the individual incubation sites, and c) between the plastic materials and the wooden control. Using a semiquantitative approach, we established metaproteome profiles, which reflect the dominant taxonomic groups as well as abundant metabolic functions in the respective samples.
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_10:43:15.756.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD012062
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Stephanie Markert
SpeciesList	scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2018-12-14 02:02:04	ID requested
⏵ 1	2024-10-07 10:43:16	announced

Dataset with its publication pending

submitter keyword: LC-MSMS, metaproteome, Biofilms, Baltic Sea,Microplastics

Stephanie Markert
contact affiliation	Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany
contact email	stephanie.markert@uni-greifswald.de
lab head
Stephanie Markert
contact affiliation	University of Greifswald
contact email	stephanie.markert@uni-greifswald.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD012062

PRIDE project URI

• PRIDE
  1. PXD012062
     1. Label: PRIDE project
     2. Name: Metaproteomics of plastic biofilms in marine environments