PXD005720

PXD005720 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Reference dataset for EnCOUNTer tool development
Description	Reference dataset used for the development of the EnCOUNTEr tool to both (i) score all characterized peptides using discriminant parameters to evidence mature protein N-termini and (ii) determine the N-terminus acetylation yield for the most reliable ones.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:34:46.651.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Willy Bienvenut
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	acetate labeling reagent (N-term) (heavy form, +3amu); 3x(2)H labeled N6-acetyl-L-lysine; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-01-16 11:27:13	ID requested
1	2017-03-14 08:25:21	announced
⏵ 2	2024-10-22 04:34:47	announced	2024-10-22: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

curator keyword: Technical
submitter keyword: organelle proteins, Mature N-terminal, Transit peptide cleavage site, Acetylation quantitation,N-terminal modifications, processing tool

curator keyword: Technical

submitter keyword: organelle proteins, Mature N-terminal, Transit peptide cleavage site, Acetylation quantitation,N-terminal modifications, processing tool

Contact List

Willy Bienvenut
contact affiliation	Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Avenue de la Terrasse, F-91198 Gif-sur-Yvette cedex, France
contact email	willy.bienvenut@i2bc.paris-saclay.fr
lab head
Willy Bienvenut
contact affiliation	CNRS
contact email	willy.bienvenut@universite-paris-saclay.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/03/PXD005720
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/03/PXD005720

PRIDE project URI

Repository Record List

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