RPXD034739 is container for
one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.
Reanalysis Container Summary
Title | JPST000210-1 Phosphoproteomics data of colon tissues (tumor and non-tumor) [Reanalysis: JPST000210] |
Description | Phosphoproteome analyses of colorectal cancer tissues from 20 patients (20 tumors and 20 tumor-adjacent normal tissues) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS/MS. The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project. [Original project description] |
HostingRepository | jPOST |
AnnounceDate | 2023-03-25 |
AnnouncementXML | Submission_2023-03-25_06:24:39.625.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/RPXD034739 |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Reanalysis of JPST000210 |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | jPOST reanalysis |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; O-phospho-L-serine; O-phospho-L-threonine; O4'-phospho-L-tyrosine |
Instrument | LTQ Orbitrap Velos |
Dataset History
Reanalysis | Revision | Datetime | Status | Title / ChangeLog Entry |
| 0 | 2022-06-20 17:56:47 | ID requested | |
0 | 1 | 2023-03-25 06:24:39 | announced | JPST000210-1 Phosphoproteomics data of colon tissues (tumor and non-tumor) [Reanalysis: JPST000210] |
Publication List
Keyword List
submitter keyword: reanalysis, colorectal cancer |
FASP |
missing protein; |
Contact List
Yasushi Ishihama |
lab head | |
jPOST reanalysis |
contact affiliation | jPOST |
dataset submitter | |
Full Dataset Link List
jPOST dataset URI |
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001740/ |