<<< Full experiment listing

RPXD034695

RPXD034695 is container for one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.

Reanalysis Container Summary
TitlePXD018357-1 Inhibition of growth factor signaling prevents SARS-CoV-2 replication [Reanalysis: PXD018357]
DescriptionCaco-2 cells were mock-infected or infected with SARS-CoV-2 patient isolates (in biological quintruplicates) for one hour, washed, and incubated for 24 hours before cell harvest. Extracted proteins were digested and split to 1) carry out whole-cell proteomics of a tandem mass tag (TMT) 10-plex samples using liquid chromatography synchronous precursor selection mass spectromety (LC-SPS-MS3), or 2) use Fe-NTA phosphopeptide enrichment (achieving 98% enrichment) for phospho proteome analyses of a TMT 10-plex analyzed by LC-MS2 First 5 channels = control Last 5 channels = infected [Original project description]
HostingRepositoryjPOST
AnnounceDate2023-03-25
AnnouncementXMLSubmission_2023-03-25_06:46:48.105.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/RPXD034695
ReviewLevelNon peer-reviewed dataset
DatasetOriginReanalysis of PXD018357
RepositorySupportSupported dataset by repository
PrimarySubmitterjPOST reanalysis
SpeciesList scientific name: cell culture; NCBI TaxID: BTO:0000214;
ModificationListS-carboxamidomethyl-L-cysteine; unknown modification; unknown modification; alpha-amino acetylated residue; L-methionine sulfoxide
InstrumentOrbitrap Fusion Lumos
Dataset History
ReanalysisRevisionDatetimeStatusTitle / ChangeLog Entry
02022-06-19 17:30:04ID requested
012023-03-25 06:46:48announcedPXD018357-1 Inhibition of growth factor signaling prevents SARS-CoV-2 replication [Reanalysis: PXD018357]
Publication List
no publication
Keyword List
submitter keyword: reanalysis, TMT, SARS-CoV-2, COVID-19, Infection, Phospho
Contact List
Yasushi Ishihama
lab head
jPOST reanalysis
contact affiliationjPOST
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001779/