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RPXD034691

RPXD034691 is container for one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.

Reanalysis Container Summary
TitlePXD019645-7 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]
DescriptionAs the SARS-CoV-2 pandemic continues to spread, thousands of scientists around the globe have changed research direction to understand better how the virus works and to find out how it may be tackled. To facilitate proteomic research on SARS-CoV-2, we presents deep-scale proteomes of common cell line models (Calu-3, Caco-2, ACE2 transfected A549 and Vero E6) and monitors changes of the proteome upon viral infection in Vero E6 cells. We provide high quality proteome expression data that can be used to refine the annotation of protein coding regions of the Vero E6 cell line genome. Further, we generated spectral libraries that can be used DIA cell line experiments or PRM assays of SARS-CoV-2 proteins. [Original project description]
HostingRepositoryjPOST
AnnounceDate2023-03-25
AnnouncementXMLSubmission_2023-03-25_06:59:41.638.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/RPXD034691
ReviewLevelNon peer-reviewed dataset
DatasetOriginReanalysis of PXD019645
RepositorySupportSupported dataset by repository
PrimarySubmitterjPOST reanalysis
SpeciesList scientific name: cell culture; NCBI TaxID: BTO:0000214;
ModificationListS-carboxamidomethyl-L-cysteine; TMT6plex reporter+balance reagent N-acylated residue; TMT6plex reporter+balance reagent acylated N-terminal; unknown modification; L-methionine sulfoxide
InstrumentOrbitrap Fusion Lumos
Dataset History
ReanalysisRevisionDatetimeStatusTitle / ChangeLog Entry
02022-06-19 17:29:44ID requested
012023-03-25 06:59:41announcedPXD019645-7 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]
Publication List
no publication
Keyword List
submitter keyword: reanalysis, SARS-CoV-2, stable isotope labeling, parallel reaction monitoring, Vero E6, ACE2, infectome, COVID-19, clinical proteomics
Contact List
Yasushi Ishihama
lab head
jPOST reanalysis
contact affiliationjPOST
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001775/