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RPXD034298

RPXD034298 is container for one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.

Reanalysis Container Summary
TitleJPST000208-1 Proteomics comparison between SW480 and SW620 cells [Reanalysis: JPST000208]
DescriptionQuantitative proteome analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using SCX-RP-MS/MS with SILAC labeling(SW480: light-label, SW620: heavy-label). The obtained results were searched against UniProt DB by Mascot, and the identified peptides and proteins were filtered at 1% FDR thresholds by searching against the randomized decoy DB both at peptide and protein levels. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project. [Original project description]
HostingRepositoryjPOST
AnnounceDate2023-03-25
AnnouncementXMLSubmission_2023-03-25_06:22:59.696.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/RPXD034298
ReviewLevelNon peer-reviewed dataset
DatasetOriginReanalysis of JPST000208
RepositorySupportSupported dataset by repository
PrimarySubmitterjPOST reanalysis
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListS-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; alpha-amino acetylated residue; 6x(13)C labeled L-lysine; Label:13C(6)15N(4)
InstrumentLTQ Orbitrap Velos
Dataset History
ReanalysisRevisionDatetimeStatusTitle / ChangeLog Entry
02022-06-05 06:17:16ID requested
012023-03-25 06:23:00announcedJPST000208-1 Proteomics comparison between SW480 and SW620 cells [Reanalysis: JPST000208]
Publication List
no publication
Keyword List
submitter keyword: reanalysis, colorectal cancer, FASP, missing protein
Contact List
Yasushi Ishihama
lab head
jPOST reanalysis
contact affiliationjPOST
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001628/