PXD078192

PXD078192 is an original dataset announced via ProteomeXchange.

Title	PlantPTM Accurate prediction of diverse PTM sites in plant with multi-view deep learning and protein language models
Description	This dataset contains integrated mass spectrometry-based profiling of N-glycosylation, lysine acetylation, and lysine ubiquitylation in rice samples. N-glycosylated peptides were enriched using lectin affinity enrichment followed by PNGase F deglycosylation in H2(18)O and analyzed using timsTOF Pro in PASEF mode. Acetylated and ubiquitinated peptides were enriched using PTM-specific antibody affinity enrichment and analyzed using Orbitrap Astral in DIA mode. The dataset was generated to support PTM characterization and PlantPTM-related analyses in plants.
HostingRepository	iProX
AnnounceDate	2026-05-09
AnnouncementXML	Submission_2026-05-08_20:20:09.048.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Zhaohui Qin
SpeciesList	scientific name: Oryza sativa; NCBI TaxID: 4530;
ModificationList	acetylated residue; ubiquitinylated lysine; N-glycosylated residue
Instrument	Orbitrap Astral; timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2026-05-08 20:19:33	ID requested
⏵ 1	2026-05-08 20:20:09	announced

Dataset with its publication pending

submitter keyword: rice, plant proteomics, acetylome, ubiquitylome, N-glycoproteomics, post-translational modification, DIA proteomics, glycoproteomics

Zhen Chen
contact affiliation	Henan Agricultural University
contact email	chenzhen-win2009@163.com
lab head
Zhaohui Qin
contact affiliation	Henan Agricultural University
contact email	13283610522@163.com
dataset submitter

iProX dataset URI