⮝ Full datasets listing
PXD072010
PXD072010 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Protein-protein interactions of RRF-3 in C. briggsae |
| Description | A mass spectrometry-based label-free proteomics analysis was performed to study the protein binders of RRF-3 in C. briggsae. Anti-MYC pull-downs were performed on 3xMYC-tagged RRF-3 in C. briggsae in a wild-type or gtsf-1 deletion background. Proteins were digested by trypsin. Peptides were measured on an Orbitrap Exploris 480 mass spectrometer. Raw data files were processed in DIA-NN software (version 2.2.0) in library-free mode. An in silico predicted spectral library was generated in DIA-NN from the UniProt reference proteomes of C. briggsae (release 2024_03; 21,756 entries), E. coli K-12 strain (release 2024_03; 4,416 entries), 3xMYC::RRF3 and a list of common contaminants. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-08-08 |
| AnnouncementXML | Submission_2026-08-08_02:46:39.467.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | J Chen |
| SpeciesList | scientific name: Caenorhabditis briggsae; NCBI TaxID: 6238; |
| ModificationList | iodoacetamide - site C |
| Instrument | Orbitrap Exploris 480 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-12-15 07:00:53 | ID requested | |
| ⏵ 1 | 2026-08-08 02:46:40 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Protein-protein interactions, C. briggsae, RRF-3, DatasetType:Proteomics |
Contact List
| Rene Ketting | |
|---|---|
| contact affiliation | Institute of Molecular Biology, Mainz |
| contact email | R.Ketting@imb-mainz.de |
| lab head | |
| J Chen | |
| contact affiliation | Institute of Molecular Biology |
| contact email | j.chen@imb-mainz.de |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v11/MSV000100221/ |
