PXD071918

PXD071918 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	An AI-ready phosphorylation meta-analysis for Saccharomyces cerevisiae.
Description	We, the PTMeXchange Consortium, present a meta-analysis of eight high-quality data sets to map 56,694 phosphosites in brewer's yeast (Saccharomyces cerevisiae) using strict control for false identifications. Each site has been classified into the Gold-Silver-Bronze (GSB) categories depending on the confidence of identification. Of the identified phosphorylation sites, 22,311 (39.4%) were classified as Gold, 9,890 (17.4%) were classified as Silver and 24,493 (43.2%) were classified as Bronze. Among the gold sites, 82% occurred on serine, 17% occurred on threonine and just 1% occurred on tyrosine.
HostingRepository	PRIDE
AnnounceDate	2025-12-16
AnnouncementXML	Submission_2025-12-16_14:35:26.272.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD071918
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Yasset Perez-Riverol
SpeciesList	scientific name: Saccharomyces cerevisiae; NCBI TaxID: NCBITaxon:4932;
ModificationList	phosphorylated residue
Instrument	Orbitrap Eclipse; Q Exactive HF; LTQ Orbitrap Velos; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-12-12 08:41:35	ID requested
⏵ 1	2025-12-16 14:35:26	announced

Publication List

10.6019/PXD071918;

10.6019/PXD071918;

Keyword List

submitter keyword: None

submitter keyword: None

Contact List

Andrew R Jones
contact affiliation	Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom
contact email	jonesar@liverpool.ac.uk
lab head
Yasset Perez-Riverol
contact affiliation	EBI
contact email	yperez@ebi.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/12/PXD071918
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/12/PXD071918

PRIDE project URI

Repository Record List

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