⮝ Full datasets listing
PXD071206
PXD071206 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Input files: A modular, immunopeptidogenomic (iPepGen) analysis pipeline for discovery, verification, and prioritization of cancer peptide neoantigen candidates |
| Description | Characterizing tumor-specific neoantigen peptides, which are derived from genomic or transcriptomic aberrations and presented to the immune system, is essential for studies in immuno-oncology. To facilitate this process, the modular iPepGen immunopeptidogenomics pipeline offers several key functions: (1) Neoantigen prediction and generation of a protein database from genomic or transcriptomic sequencing data; (2) Peptide identification; (3) Verification using immunopeptidomic mass spectral data; (4) Neoantigen classification and visualization; and (5) Candidate prioritization for further research. The pipeline is easily accessible through a publicly available, scalable cloud-based gateway and includes online interactive training materials. This streamlines adoption by cancer researchers, particularly those who may lack advanced computational expertise and resources for immunopeptidogenomic analysis. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-02-02 |
| AnnouncementXML | Submission_2026-02-02_07:51:21.578.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Subina P Mehta |
| SpeciesList | scientific name: HUMAN; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | instrument model |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-11-25 12:03:56 | ID requested | |
| ⏵ 1 | 2026-02-02 07:51:22 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Neoantigen, immunopeptidomics, immuno-oncology, mass spectrometry, next generation sequencing, multi-omics, Galaxy, bioinformatics, workflow, DatasetType:Proteomics |
Contact List
| Timothy J.Griffin | |
|---|---|
| contact affiliation | University of Minnesota |
| contact email | tgriffin@umn.edu |
| lab head | |
| Subina P Mehta | |
| contact affiliation | University of Minnesota |
| contact email | smehta@umn.edu |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v11/MSV000100019/ |
