PXD071012

PXD071012 is an original dataset announced via ProteomeXchange.

Title	Variable Thresholds for Phosphorylation Targets of the ERK Signaling Pathway
Description	Cell fates regulated by ERK/MAP kinases respond to different thresholds of signaling strength. In mammalian cells, conditions that activate ERK to submaximal levels are sufficient to sustain proliferation, survival and transformation, while stimuli that activate ERK to very high levels often lead to cell death or cell cycle arrest. But while this “Goldilocks effect” is well known, the mechanisms have never been fully explained. In particular, threshold responses have been shown at the level of transcription and cell state changes, but whether phosphorylation responses upstream of these events also respond to thresholds is unknown. Here we used mass spectrometry-based phosphoproteomics to ask if molecular events in the ERK pathway respond to different thresholds of signaling strength, by quantifying changes in phosphorylation of pathway targets against the occupancy of the two activating phosphosites in ERK. The results show that most phosphorylation events track ERK activation faithfully, responding linearly with increasing 2P-ERK occupancy. But some sites respond nonlinearly, reaching maximal phosphorylation when 2P-ERK exceeds lower thresholds (10-40%), or increasing substantially after 2P-ERK exceeds higher thresholds (>60%). Low threshold sites are found on transcriptional repressors that facilitate proliferation when inactivated by ERK/RSK phosphorylation. By contrast, high threshold sites are found on proteins that are recruited to dsDNA breaks and mediate DNA repair. Measurement of phosphorylation occupancies also revealed unexpected differences between cell states not apparent from inhibitor fold-changes. Our findings demonstrate that signaling thresholds exist at the level of the phosphoproteome, providing potential mechanisms for regulating cellular responses to pathway strength.
HostingRepository	PRIDE
AnnounceDate	2026-02-25
AnnouncementXML	Submission_2026-02-25_14:07:46.238.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD071012
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Kristyn Hayashi
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: NEWT:9606;
ModificationList	phosphorylated residue
Instrument	Q Exactive HF-X

Revision	Datetime	Status	ChangeLog Entry
0	2025-11-20 14:38:05	ID requested
⏵ 1	2026-02-25 14:07:47	announced

10.6019/PXD071012;

10.1073/pnas.2517889123;

Hayashi K, Sekaran S, Simpson P, Ebmeier CC, Michel CR, Ahn NG, Variable thresholds for phosphorylation targets of the ERK signaling pathway. Proc Natl Acad Sci U S A, 123(6):e2517889123(2026) [pubmed]

submitter keyword: None

Natalie Ahn
contact affiliation	Distinguished Professor Associate Chair for Undergraduate Affairs
contact email	natalie.ahn@colorado.edu
lab head
Kristyn Hayashi
contact affiliation	University of Colorado Boulder
contact email	kristyn.hayashi@colorado.edu
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD071012
     1. Label: PRIDE project
     2. Name: Variable Thresholds for Phosphorylation Targets of the ERK Signaling Pathway