PXD068188

PXD068188 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Identification of VIPP1-interacting proteins in Arabidopsis.
Description	Results from co-immunoprecipitation (co-IP)–MS analysis of VIPP-YFP bait, expressed in wild-type Arabidopsis thaliana. GFP-Trap magnetic agarose beads were used for co-IP. Co-precipitated peptides were digested on the beads and analyzed by liquid chromatography–mass spectrometry (LC-MS). The MS data were processed using the Philosopher toolkit, with MSFragger as the search engine, followed by IonQuant. SAINTexpress software was used to score potential interactions between the observed proteins (potential prey) and the bait protein. It is recommended to use .raw files for reanalysis.
HostingRepository	MassIVE
AnnounceDate	2025-09-11
AnnouncementXML	Submission_2025-09-11_02:50:45.706.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Mayank Sharma
SpeciesList	scientific name: Arabidopsis thaliana; common name: thale cress; NCBI TaxID: 3702;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-09-08 10:07:31	ID requested
⏵ 1	2025-09-11 02:50:46	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: VIPP1, Chloroplast, Protein-protein interaction, co-IP, DatasetType:Proteomics

submitter keyword: VIPP1, Chloroplast, Protein-protein interaction, co-IP, DatasetType:Proteomics

Contact List

Mayank Sharma
contact affiliation	IMPB, ETH Zurich
contact email	mayank.sharma@biol.ethz.ch
lab head
Mayank Sharma
contact affiliation	ETH Zurich
contact email	mayank.sharma@biol.ethz.ch
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v10/MSV000099084/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v10/MSV000099084/