PXD066739
PXD066739 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | S. elongatus PCC 7942 Limited Proteolysis Structural Proteomics (JM-PB-DP3), TPP-MS-TMT10 |
| Description | The purpose of this experiment was to investigate structural alterations in proteins involved in central carbon metabolism and photosynthetic electron transfer pathways in Synechococcus elongatus PCC 7942. Sample data was obtained from S. elongatus PCC 7942 cell lysates treated across 10 temperatures (37 to 82 deg C in 5 deg C increments, prepared using thermal proteome profiling by mass spectrometry (TPP-MS), and fractionated for TMT10 proteomic analysis. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline, followed by Tandem Mass Tag 10-Plex (TMT10) quantitation using PlexedPiper. |
| HostingRepository | MassIVE |
| AnnounceDate | 2025-10-16 |
| AnnouncementXML | Submission_2025-10-16_15:42:34.868.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Synechococcus elongatus PCC 7942; NCBI TaxID: 1140; |
| ModificationList | Oxidation; TMT6plex |
| Instrument | Q Exactive HF-X |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-07-29 20:02:34 | ID requested | |
| ⏵ 1 | 2025-10-16 15:42:35 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Cyanobacteria, Light Fluctuation, Structural Proteomics, Redox Proteomics, Thermal Proteome Profiling, Thiol Oxidation, DatasetType:Proteomics |
Contact List
| Snigdha Sarkar | |
|---|---|
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | snigdha.sarkar@pnnl.gov |
| lab head | |
| John T. Melchior | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | john.melchior@pnnl.gov |
| lab head | |
| Matthew Monroe | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v10/MSV000098679/ |
to receive all new ProteomeXchange dataset release announcements!
