PXD064229

PXD064229 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	IP-MS experiment for the ubiquitin-conjugating E2 enzyme SiUBC39
Description	In Setaria italica (foxtail millet), SiUBC39 is implicated in regulating key agronomic traits, including plant height, flowering time, and stress tolerance. To elucidate the molecular mechanisms underlying SiUBC39’s roles in these traits, we affinity-purified SiUBC39-GFP and the corresponding GFP control protein via immunoprecipitation (IP). The immunoprecipitated complexes were then subjected to liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis to identify proteins interacting with SiUBC39.
HostingRepository	PRIDE
AnnounceDate	2025-09-04
AnnouncementXML	Submission_2025-09-04_15:27:55.591.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tang Sha
SpeciesList	scientific name: Setaria italica; NCBI TaxID: 4555;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-05-23 01:50:00	ID requested
⏵ 1	2025-09-04 15:27:55	announced

Publication List

10.1111/TPJ.70473;

10.1111/TPJ.70473;

Keyword List

submitter keyword: Ubiquitin
E2
Setaria
IP-MS

submitter keyword: Ubiquitin

Setaria

IP-MS

Contact List

Sha Tang
contact affiliation	Chinese Academy of Agricultural Sciences, Institute of Crop Sciences
contact email	tangsha@caas.cn
lab head
Tang Sha
contact affiliation	Institute of Crop Sciences, Chinese Academy of Agricultural Sciences
contact email	tangsha@caas.cn
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/09/PXD064229
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/09/PXD064229

PRIDE project URI

Repository Record List

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