PXD063294

PXD063294 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Biodiversity library of protein tri-methylation in bacteria
Description	Phyloproteomics analysis of tri-methylation sites across 49 bacterial strains from 48 species; 1~3 biological replicates. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline.
HostingRepository	MassIVE
AnnounceDate	2025-06-06
AnnouncementXML	Submission_2025-06-06_14:43:12.702.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Bacteroides fragilis 638R; NCBI TaxID: 862962; scientific name: Bacteroides thetaiotaomicron VPI-5482; NCBI TaxID: 226186; scientific name: Myxococcus xanthus DZ2; NCBI TaxID: 1198133; scientific name: Bacillus subtilis; NCBI TaxID: 1423; scientific name: Rhodopseudomonas palustris; NCBI TaxID: 1076;
ModificationList	Trimethyl; Oxidation
Instrument	Q Exactive Plus

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-04-24 10:58:28	ID requested
⏵ 1	2025-06-06 14:43:13	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: phyloproteomics, trimethylation, evolutionary conservation, DatasetType:Proteomics

submitter keyword: phyloproteomics, trimethylation, evolutionary conservation, DatasetType:Proteomics

Contact List

Ernesto S. Nakayasu
contact affiliation	Pacific Northwest National Laboratory
contact email	ernesto.nakayasu@pnnl.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v09/MSV000097716/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v09/MSV000097716/