PXD061500 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Biomarker identification in hospitalised patients with COVID-19: a cohort study of acute infection and convalescence. |
| Description | Pilot bottom-up depleted proteomic analysis of patients from the ManARTS COVID-19 cohort in early stages of the pandemic, for method development of high-throughput proteomics using small volumes of plasma and a 15-minute gradient. Demonstrates proof-of-concept for stratifying patients in an opportunistically collected cohort in a pandemic setting using available hospital data. Convalescent patients were used as an age and sex-matched comparator group against critically ill patients with a current infection. |
| HostingRepository | PRIDE |
| AnnounceDate | 2026-06-08 |
| AnnouncementXML | Submission_2026-06-07_18:20:10.538.xml |
| DigitalObjectIdentifier | https://doi.org/10.6019/PXD061500 |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Shaufa Shareef |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: NEWT:9606; |
| ModificationList | phosphorylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue |
| Instrument | SELECT SERIES Cyclic IMS |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2025-03-05 05:08:43 | ID requested | |
| ⏵ 1 | 2026-06-07 18:20:11 | announced | |
Publication List
| Shareef S, Matthews E, Dodds J, Silverberg A, Daly ME, Ahmed W, Bannard-Smith J, Gethings LA, King A, Hughes C, Fowler S, Felton T, Simpson A, Mills ENC, Characterisation of a cohort of opportunistically recruited patients with COVID-19 and approaches to patient stratification. BMC Infect Dis, 26(1):(2026) [pubmed] |
| 10.6019/PXD061500; |
| 10.1186/s12879-026-13070-7; |
Keyword List
| submitter keyword: Human, LC-IMS-MS, Plasma, COVID-19 |
Contact List
| EN Clare Mills |
|---|
| contact affiliation | School of Biosciences and Medicine, the University of Surrey, Guildford GU2 7XH, Surrey, UK Division of Immunology, Immunity to Infection and Respiratory Medicine, School of Biological Sciences, Manchester Institute of Biotechnology, Manchester Academic Health Sciences Centre, University of Manchester, Manchester M1 7DN, Greater Manchester, UK |
| contact email | clare.mills@surrey.ac.uk |
| lab head | |
| Shaufa Shareef |
|---|
| contact affiliation | University of Manchester |
| contact email | aishath.shareef@postgrad.manchester.ac.uk |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/06/PXD061500 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD061500
- Label: PRIDE project
- Name: Biomarker identification in hospitalised patients with COVID-19: a cohort study of acute infection and convalescence.
