PXD061293

PXD061293 is an original dataset announced via ProteomeXchange.

Title	Multi-omics Study of Single Nucleotide Variants (SNVs) in CRC Cancer Cell Lines
Description	We comprehensively investigating mutated peptide detection in CRC cell lines. Transcriptome collected from cell lines, gather the sets of nsSNVs that are express in RNA level to construct customized mutated protein libraries, MaxQuant was used to searched the libraries against shotgun MS data obtain from the same sample. Then, various characteristics of the detected mutated peptides were described, including identification number, identification overlap, and peptide quality.
HostingRepository	iProX
AnnounceDate	2025-02-26
AnnouncementXML	Submission_2025-02-27_18:13:37.649.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xia Zhang
SpeciesList	scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2025-02-27 18:12:23	ID requested
⏵ 1	2025-02-27 18:13:38	announced

Dataset with its publication pending

submitter keyword: CRC cell lines, Single-nucleotide variant (SNVs), Multi-omics, Transcriptome, Proteome, Mutated peptides

Siqi Liu
contact affiliation	University of Chinese Academy of Sciences
contact email	siqiliu@genomics.cn
lab head
Xia Zhang
contact affiliation	University of Chinese Academy of Sciences
contact email	zhangxia1@genomics.cn
dataset submitter

iProX dataset URI