PXD061188

PXD061188 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Wu Selective Inhibition of matrix mechanosensing AP-MS
Description	The .d files acquired in data-independent mode were analyzed using Spectronaut v 19.1 (Biognosys AG, Schlieren, Switzerland) with the directDIA+ feature against the Uniprot Homo sapiens protein database. Proteolysis with Trypsin was assumed to be semi-specific, allowing for N-ragged cleavage with up to two missed cleavage sites, with a PSM false discovery rate (FDR) of 1%. Data filtering was based on the Q Value, and global normalization was utilized. Cysteine modified with iodoacetamide was set as a fixed modification. Variable modifications included oxidation of methionine and tryptophan, deamidation of asparagine and glutamine, and phosphorylation of serine, threonine, and tyrosine.
HostingRepository	MassIVE
AnnounceDate	2025-03-03
AnnouncementXML	Submission_2025-03-03_11:35:16.726.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Arianne Caudal
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	Phospho; Carbamidomethyl; Oxidation; Deamidated:18O(1)
Instrument	timsTOF Ultra

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-02-25 11:28:52	ID requested
⏵ 1	2025-03-03 11:35:17	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: affinity pull down, DatasetType:Proteomics

submitter keyword: affinity pull down, DatasetType:Proteomics

Contact List

Arianne Caudal
contact affiliation	Stanford University
contact email	acaudal@stanford.edu
lab head
Arianne Caudal
contact affiliation	Stanford University
contact email	acaudal@stanford.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v09/MSV000097212/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v09/MSV000097212/