PXD061075

PXD061075 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Clear Cell Renal Cell Carcinoma Serum and Tissue Proteomics
Description	LC-MS/MS analysis was performed on tissue and serum samples from ten PDX mice derived from ccRCC tissues obtained through nephrectomy, autopsy, or biopsy, as well as six control non-PDX serum samples, and 32 normal human kidney samples. All data was collected in triplicate.
HostingRepository	PRIDE
AnnounceDate	2025-05-07
AnnouncementXML	Submission_2025-05-07_13:10:56.428.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sharon Pitteri
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Eclipse; LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-02-21 23:48:24	ID requested
⏵ 1	2025-05-07 13:10:57	announced

Publication List

Qiu Z, Zhang D, Garcia-Marques FJ, Bermudez A, Zhao H, Peehl DM, Pitteri SJ, Brooks JD, Identification of Molecular Subtypes of Clear-Cell Renal Cell Carcinoma in Patient-Derived Xenografts Using Multi-Omics. Cancers (Basel), 17(8):(2025) [pubmed]
10.3390/cancers17081361;

Qiu Z, Zhang D, Garcia-Marques FJ, Bermudez A, Zhao H, Peehl DM, Pitteri SJ, Brooks JD, Identification of Molecular Subtypes of Clear-Cell Renal Cell Carcinoma in Patient-Derived Xenografts Using Multi-Omics. Cancers (Basel), 17(8):(2025) [pubmed]

10.3390/cancers17081361;

Keyword List

submitter keyword: patient-derived xenografts
biomarkers
clear cell renal cell carcinoma
serum
tissue
proteomics

submitter keyword: patient-derived xenografts

biomarkers

clear cell renal cell carcinoma

serum

tissue

proteomics

Contact List

Sharon Pitteri
contact affiliation	Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University
contact email	spitteri@stanford.edu
lab head
Sharon Pitteri
contact affiliation	Stanford University
contact email	spitteri@stanford.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD061075
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD061075

PRIDE project URI

Repository Record List

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