PXD060958 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Oesophageal Tumour and Normal Oesophageal and Stomach tissue HLA class II Immunopeptidomics |
| Description | Oesophageal TumOesophageal Tumour and Normal Oesophageal and Stomach tissue were analysed with HLA class II Immunopeptidomics using the L243 antibody |
| HostingRepository | PRIDE |
| AnnounceDate | 2026-06-08 |
| AnnouncementXML | Submission_2026-06-07_19:09:31.931.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Nicola Ternette |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: NEWT:9606; |
| ModificationList | phosphorylated residue |
| Instrument | Orbitrap Fusion Lumos |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2025-02-19 06:13:24 | ID requested | |
| ⏵ 1 | 2026-06-07 19:09:32 | announced | |
Publication List
| 10.1021/acs.jproteome.5c01284; |
| Garcia Alvarez HM, Kaabinejadian S, Yari H, Shepherd CM, Hildebrand WH, Sette A, Peters B, Parker R, Ternette N, Nielsen M, NetMHCIIphosPan: A Machine Learning Tool for Predicting HLA Class II Antigen Presentation of Phosphorylated Peptides. J Proteome Res, 25(5):2529-2545(2026) [pubmed] |
Keyword List
| ProteomeXchange project tag: Human Immuno-Peptidome Project (HUPO-HIPP) (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project |
| submitter keyword: Oesphageal tumour, Immunopeptidomics, adenocarcinoma, HLA class II |
Contact List
| Nicola Ternette |
|---|
| contact affiliation | University of Oxford University of Dundee |
| contact email | nicola.ternette@ndm.ox.ac.uk |
| lab head | |
| Nicola Ternette |
|---|
| contact affiliation | University of Oxford |
| contact email | nicola.ternette@ndm.ox.ac.uk |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/06/PXD060958 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD060958
- Label: PRIDE project
- Name: Oesophageal Tumour and Normal Oesophageal and Stomach tissue HLA class II Immunopeptidomics
