PXD060573

PXD060573 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	A Technical Evaluation of Plasma Proteomics Technologies
Description	We report a technical evaluation of six notable plasma proteomics technologies from recent years. Unenriched plasma, perchloric acid depletion, PreOmics ENRICHplus, Mag-Net, Seer Proteograph XT, and Olink Explore HT. The methods were compared on proteomic depth, reproducibility, linearity, tolerance to lipid interference, and limit of detection/quantification. We also tested the applicability of these methods for detecting differences between healthy and cancer groups in a non-small cell lung cancer cohort.
HostingRepository	PRIDE
AnnounceDate	2025-05-14
AnnouncementXML	Submission_2025-05-13_16:14:30.018.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Joshua Coon
SpeciesList	scientific name: Gallus gallus (Chicken); NCBI TaxID: 9031; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Astral

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-02-07 01:14:38	ID requested
⏵ 1	2025-05-13 16:14:30	announced

Publication List

10.1021/ACS.JPROTEOME.5C00221;

10.1021/ACS.JPROTEOME.5C00221;

Keyword List

submitter keyword: Plasma, LC-MS, Proteomics

submitter keyword: Plasma, LC-MS, Proteomics

Contact List

Joshua J.
contact affiliation	University of Wisconsin-Madison, Morgridge Institute for Research
contact email	jcoon@chem.wisc.edu
lab head
Joshua Coon
contact affiliation	University of Wisconsin - Madison, Morgridge Institute for Research
contact email	jcoon@chem.wisc.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD060573
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD060573

PRIDE project URI

Repository Record List

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