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PXD060515
PXD060515 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Arabidopsis seeds translation regulation |
| Description | This study explores translational regulation during germination by comparing two Arabidopsis thaliana accessions with contrasting dormancy phenotypes: Columbia (Col), which germinates readily, and Cape Verde Islands (Cvi), which exhibits deep dormancy. Using sucrose gradient centrifugation, we isolated monosomal and polysomal fractions from freshly harvested (FH), after-ripened (AR), and imbibed (IM) seeds. In this study, we have compared the mRNAs and associated proteins stored in monosomes or polysomes at the stages of seed maturity, post-ripening and early germination using two Arabidopsis genotypes differing in dormancy level |
| HostingRepository | PRIDE |
| AnnounceDate | 2025-12-15 |
| AnnouncementXML | Submission_2025-12-14_22:43:20.943.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Václav Pustka |
| SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: NEWT:3702; |
| ModificationList | iodoacetamide derivatized residue |
| Instrument | timsTOF Pro |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-02-05 06:29:18 | ID requested | |
| ⏵ 1 | 2025-12-14 22:43:21 | announced |
Publication List
| 10.1007/s11103-025-01659-6; |
| Balarynov, á J, Kl, č, ov, á B, Č, egan R, Raabe K, Krej, č, í P, Bedn, á, ř P, Pot, ě, š, il D, Pustka V, Tarkowsk, á D, Ture, č, kov, á V, Zdr, á, hal Z, Honys D, Sm, ý, kal P, Translational and epitranscriptomic regulation of seed germination in Arabidopsis thaliana genotypes with contrasting dormancy phenotypes. Plant Mol Biol, 115(6):135(2025) [pubmed] |
Keyword List
| submitter keyword: proteomics,Arabidopsis, germination, seeds, translation |
Contact List
| Zbynek Zdrahal | |
|---|---|
| contact affiliation | Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic |
| contact email | zdrahal@sci.muni.cz |
| lab head | |
| Václav Pustka | |
| contact affiliation | Proteomics Core Facility and Research Group Proteomics CEITEC-MU Masaryk University Brno, Czech Republic |
| contact email | vaclav.pustka@ceitec.muni.cz |
| dataset submitter | |
Full Dataset Link List
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/12/PXD060515 |
| PRIDE project URI |
Repository Record List
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