PXD060463

PXD060463 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteome and metabolome alterations in radish (Raphanus sativus L.) seedlings induced by inoculation with Agrobacterium tumefaciens
Description	Here we provide a comprehensive explorative proteomics survey aiming at intensive charac-terization of metabolic shifts and molecular events accompanying plant responses to inoculation with A. tumefaciens culture. Based on the comprehensive proteomics dataset complemented with an untargeted metabolite profiling, we characterize the metabolic shifts, associated with agro-bacterial infection
HostingRepository	PRIDE
AnnounceDate	2025-05-07
AnnouncementXML	Submission_2025-05-07_06:58:34.380.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD060463
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Daria Gorbach
SpeciesList	scientific name: Raphanus sativus; NCBI TaxID: 3726;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-02-04 07:18:36	ID requested
⏵ 1	2025-05-07 06:58:35	announced

Publication List

10.6019/PXD060463;
10.3390/biom15020290;
Frolova N, Gorbach D, Ihling C, Bilova T, Orlova A, Lukasheva E, Fedoseeva K, Dodueva I, Lutova LA, Frolov A, . Biomolecules, 15(2):(2025) [pubmed]

10.6019/PXD060463;

10.3390/biom15020290;

Frolova N, Gorbach D, Ihling C, Bilova T, Orlova A, Lukasheva E, Fedoseeva K, Dodueva I, Lutova LA, Frolov A, . Biomolecules, 15(2):(2025) [pubmed]

Keyword List

submitter keyword: Radish, shotgun proteomics, Agrobacterium tumefaciens, metabolic shifts,crown gall tumor, Agrobacterium,Raphanus sativus, agrobacterial infection

submitter keyword: Radish, shotgun proteomics, Agrobacterium tumefaciens, metabolic shifts,crown gall tumor, Agrobacterium,Raphanus sativus, agrobacterial infection

Contact List

Dr. Andrej Frolov
contact affiliation	Laboratory of Analytical Biochemistry and Biotechnology, K.A. Timiryazev Institute of Plant Physiology Russian Academy of Science, Moscow, Russia
contact email	frolov@ifr.moscow
lab head
Daria Gorbach
contact affiliation	Saint-Petersburg State University
contact email	daria.gorba4@yandex.ru
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD060463
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD060463

PRIDE project URI

Repository Record List

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