PXD060444

PXD060444 is an original dataset announced via ProteomeXchange.

Title	Effect of Ipomoeassin F on the Proteome Profile in Triple-Negative Breast Cancer Cells
Description	Ipomoeassin F (Ipom-F) is a natural compound that exhibits a potent cytotoxic effect on triple-negative breast cancer (TNBC) cells. The mechanism underlying this selective potency remains unclear. To elucidate this mechanism, we analyzed the proteome profiles of the TNBC MDA-MB-231 cells after exposure to Ipom-F at different time points and increasing doses using a quantitative proteomic method. Our proteomic data demonstrate that the major effect of Ipom-F on MDA-MB-231 cells is the inhibition of membrane and secreted protein expression. These findings align with the recently uncovered molecular mechanism of action of Ipom-F, which binds to Sec61-α and inhibits the co-translational import of proteins into the endoplasmic reticulum. We have defined a subset of membrane and secreted proteins particularly sensitive to Ipom-F. Analysis of the expression of these Ipom-F-sensitive proteins in cancer cell lines and breast cancer tissues reveals that some of these proteins are upregulated in TNBC cells. This suggests that TNBC cells may have adapted to the elevated levels of these proteins, making them more dependent on their expression. Consequently, inhibiting these proteins leads to a crisis in proliferation and/or survival. Additionally, our data suggests that Ipom-F may act as an immunosuppressive agent.
HostingRepository	PRIDE
AnnounceDate	2025-09-15
AnnouncementXML	Submission_2025-09-14_16:49:48.498.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yuchun Du
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	6x(13)C labeled residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2025-02-03 16:29:17	ID requested
⏵ 1	2025-09-14 16:49:49	announced

10.1021/acsomega.5c02784;

Sicairos B, Zhou J, Hu Z, Zhang Q, Shi WQ, Du Y, Effect of Ipomoeassin F on the Synthesis of Membrane and Secretory Proteins in Triple-Negative Breast Cancer Cells. ACS Omega, 10(34):38522-38530(2025) [pubmed]

submitter keyword: breast cancer,human, Ipomoeassin F

Yuchun Du
contact affiliation	University of Arkansas
contact email	ydu@uark.edu
lab head
Yuchun Du
contact affiliation	University of Arkansas
contact email	ydu@uark.edu
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD060444
     1. Label: PRIDE project
     2. Name: Effect of Ipomoeassin F on the Proteome Profile in Triple-Negative Breast Cancer Cells