PXD058859

PXD058859 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	PUP-IT proximity-labeling of LST8-1 and RAPTOR1 interactors (transient expression in N. benthamiana)
Description	PUP-IT proximity labeling of Arabidopsis Target of Rapamycin Complex (TORC) subunits LST8-1 and RAPTOR1, compared against a GFP control, via transient expression in Nicotiana benthamiana. The sample metadata, sequence database and FragPipe workflow are uploaded under the 'Metadata' tag. A short R script to format FragPipe TSV output for mzTab conversion is under 'Supplementary Files'.
HostingRepository	MassIVE
AnnounceDate	2025-03-03
AnnouncementXML	Submission_2025-03-03_02:04:35.851.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Leonard Blaschek
SpeciesList	scientific name: Arabidopsis thaliana; common name: thale cress; NCBI TaxID: 3702; scientific name: Nicotiana benthamiana; NCBI TaxID: 4100;
ModificationList	Acetyl; pupylation; Oxidation; Carbamidomethyl
Instrument	timsTOF Pro

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-12-13 08:49:19	ID requested
⏵ 1	2025-03-03 02:04:36	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: PUP-IT, Proximity labeling, Target of Rapamycin, TOR, DatasetType:Proteomics

submitter keyword: PUP-IT, Proximity labeling, Target of Rapamycin, TOR, DatasetType:Proteomics

Contact List

Staffan Persson
contact affiliation	Copenhagen University
contact email	staffan.persson@plen.ku.dk
lab head
Leonard Blaschek
contact affiliation	Copenhagen University
contact email	l.blaschek@vivaldi.net
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v07/MSV000096657/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v07/MSV000096657/