PXD058650
PXD058650 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic diversity in bacteria: Insights and implications for bacterial identification |
Description | We acquired the largest bacterial proteomic resource, covering 303 species, 119 genera, and five phyla. The proteome coverage is, on average, over 50%. Additionally, we acquired further datasets for bacterial identification algorithm validation: i) 303 species at a 30-minute gradient (38 samples per day throughput), ii) 303 species at a 10-minute gradient (80 samples per day throughput), iii) reproducibility dataset, iv) genus-specific Pseudomonas spp. dataset (94 Pseudomonas spp. strains), v) genus-specific Bacillus spp. dataset (28 Bacillus cereus s.l. strains), vi) food routine dataset (60 dairy product isolates), and vii) clinical routine dataset (570 clinical isolates). |
HostingRepository | MassIVE |
AnnounceDate | 2025-05-07 |
AnnouncementXML | Submission_2025-05-07_13:45:44.108.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Christina Ludwig |
SpeciesList | scientific name: Bacteria; common name: eubacteria; NCBI TaxID: 2; |
ModificationList | Carbamidomethyl; Oxidation; Acetyl |
Instrument | Orbitrap Exploris 480; Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2024-12-06 07:32:52 | ID requested | |
⏵ 1 | 2025-05-07 13:45:44 | announced |
Publication List
Abele M, Soleymaniniya A, Bayer FP, Lomp N, Doll E, Meng C, Neuhaus K, Scherer S, Wenning M, Wantia N, Kuster B, Wilhelm M, Ludwig C, Proteomic Diversity in Bacteria: Insights and Implications for Bacterial Identification. Mol Cell Proteomics, 24(3):100917(2025) [pubmed] |
Keyword List
submitter keyword: proteomic map, bacteria, bacterial identification, proteotyping, DatasetType:Proteomics |
Contact List
Christina Ludwig | |
---|---|
contact affiliation | BayBioMS, Technical University of Munich |
contact email | tina.ludwig@tum.de |
lab head | |
Christina Ludwig | |
contact affiliation | BayBioMS, Technical University of Munich (TUM) |
contact email | tina.ludwig@tum.de |
dataset submitter |
Full Dataset Link List
MassIVE dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v07/MSV000096603/ |