PXD058650

PXD058650 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic diversity in bacteria: Insights and implications for bacterial identification
Description	We acquired the largest bacterial proteomic resource, covering 303 species, 119 genera, and five phyla. The proteome coverage is, on average, over 50%. Additionally, we acquired further datasets for bacterial identification algorithm validation: i) 303 species at a 30-minute gradient (38 samples per day throughput), ii) 303 species at a 10-minute gradient (80 samples per day throughput), iii) reproducibility dataset, iv) genus-specific Pseudomonas spp. dataset (94 Pseudomonas spp. strains), v) genus-specific Bacillus spp. dataset (28 Bacillus cereus s.l. strains), vi) food routine dataset (60 dairy product isolates), and vii) clinical routine dataset (570 clinical isolates).
HostingRepository	MassIVE
AnnounceDate	2025-05-07
AnnouncementXML	Submission_2025-05-07_13:45:44.108.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Christina Ludwig
SpeciesList	scientific name: Bacteria; common name: eubacteria; NCBI TaxID: 2;
ModificationList	Carbamidomethyl; Oxidation; Acetyl
Instrument	Orbitrap Exploris 480; Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-12-06 07:32:52	ID requested
⏵ 1	2025-05-07 13:45:44	announced

Publication List

Abele M, Soleymaniniya A, Bayer FP, Lomp N, Doll E, Meng C, Neuhaus K, Scherer S, Wenning M, Wantia N, Kuster B, Wilhelm M, Ludwig C, Proteomic Diversity in Bacteria: Insights and Implications for Bacterial Identification. Mol Cell Proteomics, 24(3):100917(2025) [pubmed]

Abele M, Soleymaniniya A, Bayer FP, Lomp N, Doll E, Meng C, Neuhaus K, Scherer S, Wenning M, Wantia N, Kuster B, Wilhelm M, Ludwig C, Proteomic Diversity in Bacteria: Insights and Implications for Bacterial Identification. Mol Cell Proteomics, 24(3):100917(2025) [pubmed]

Keyword List

submitter keyword: proteomic map, bacteria, bacterial identification, proteotyping, DatasetType:Proteomics

submitter keyword: proteomic map, bacteria, bacterial identification, proteotyping, DatasetType:Proteomics

Contact List

Christina Ludwig
contact affiliation	BayBioMS, Technical University of Munich
contact email	tina.ludwig@tum.de
lab head
Christina Ludwig
contact affiliation	BayBioMS, Technical University of Munich (TUM)
contact email	tina.ludwig@tum.de
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v07/MSV000096603/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v07/MSV000096603/