PXD058641

PXD058641 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Integrated omics approaches to explore a new system of genetic control of dibenzothiophene desulfurization in Gordonia alkanivorans strain 135 -- MS1
Description	This project aims to explore a new system for genetic control of dibenzothiophene desulfurization in Gordonia alkanivorans strain 135 using integrated omics approaches. A quantitative protomics, RNA-Seq analysis was performed. RNA-seq results were further validated using qRT-PCR for differentially expressed genes.
HostingRepository	PRIDE
AnnounceDate	2025-05-07
AnnouncementXML	Submission_2025-05-07_05:27:08.224.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tomiris Kusainova
SpeciesList	scientific name: Gordonia alkanivorans; NCBI TaxID: 84096;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive HF-X

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-12-06 00:41:41	ID requested
⏵ 1	2025-05-07 05:27:09	announced

Publication List

Frantsuzova E, Bogun A, Vetrova A, Kazakova E, Kusainova T, Tarasova I, Pozdnyakova-Filatova I, Delegan Y, Strain 135. Biology (Basel), 14(2):(2025) [pubmed]
10.3390/biology14020188;

Frantsuzova E, Bogun A, Vetrova A, Kazakova E, Kusainova T, Tarasova I, Pozdnyakova-Filatova I, Delegan Y, Strain 135. Biology (Basel), 14(2):(2025) [pubmed]

10.3390/biology14020188;

Keyword List

submitter keyword: Dibenzothiophene,MS1-only, G. alkanivorans 135, DirectMS1

submitter keyword: Dibenzothiophene,MS1-only, G. alkanivorans 135, DirectMS1

Contact List

Dr Irina A. Tarasova
contact affiliation	INEPCP FRCCP RAS, Moscow, Russia
contact email	iatarasova@yandex.ru
lab head
Tomiris Kusainova
contact affiliation	V. L. Talrose Institute for Energy Problems of Chemical Physics, N. N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119334 Moscow, Russia Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia
contact email	kusainova7531@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD058641
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD058641

PRIDE project URI

Repository Record List

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